CI01000018_00029420_00038887 (PCK2)


Basic Information

Item Value
gene id CI01000018_00029420_00038887
gene name PCK2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 28870 ~ 38887 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_00029420_00038887.mRNA
GCGAAATGCCATCAGTACAGCTTCAGTGGGAGCGCGGTCCCTCGCCTCCATTCCCTCTCTGCCCTCGTCAGTGGCTGACTTTGTGTCTGGCGCAGTGGCTGAGTGTAAACCTGCTAAAGTGCACGTGGTCACAGGCACACCAGAGGAGTCGGCAGACATCCTAGCCAACCTAGAGAGAGAGGGCATGGTAAAGAAACTCAGCAAATATAAAAACTGCTGGCTGGCACGTACTGACCCTAAAGATGTGGCTCGTGTGGAGAGTAAGACAGTGATCGTCACGAAGAACCAAAGAGACACTATCCCCATCCCCACCGGAGGTGCCAAGTCCCAGCTGGGCAGCTGGATGAGTGAGGCAGACTTCCAGAAGGCCAGAGAGGACCGCTTTCCTGGCTGCATGGCAGGACGCACTATGTATGTGATCCCCTTCAGTATGGGCCCTGTGAACTCTTCTCTTGCTAAGTTTGGTGTTCAGGTGACAGATTCTCCATATGTGGTGGCTAGCATGGGCATCATGACACGCATGGGGACACCAGTGCTGGAGAAACTAGCAGAGGGAGCGGAGTTTGTGCGCTGCCAGCACTCTTTGGGCAGACCTTTACCACTCAAAGCTCCTTTAGTAAACAGCTGGCCTTGTAACCCAGAGAAGGTGTTGATCTCACATCTCCCAGACACCAGGCAGATCTTATCCTTCGGCAGTGGTTATGGTGGAAACTCACTCCTTGGAAAGAAGTGCTTTGCTCTTCGTATCGCCTCACGCATCGCCAAAGACGAAGGCTGGTTGGCTGAACACATGCTGATTCTGGGAATCACAAATCCTCAGGGTGTAAAGCGGTACATTGCAGCAGCATTCCCGAGCGCTTGTGGAAAAACTAACCTGGCCATGATGAAACCAGCACTGCCAGGCTGGAAGGTTGAGTGTGTGGGCGATGACATCGCCTGGATGAAATTTGACAGTCAGGGTAAACTCAGAGCTATTAATCCAGAGAATGGTTTCTTCGGAGTTGCCCCCGGGACGTCCCTAAAGACCAACCCTCATGCCATGGCAACCATCTCCAGTAACACAGTGTTCACTAACGTAGGAGAGACCAGCGATGGGGGGGTTTGGTGGGAGGGTCTGGATCCACCTGCACCTGGAATCAAACTCACAGACTGGCATGGAAAATCTTGGAAGTATGGTGATTCTACACTGTGCGCTCACCCGAACTCCAGGTTTTGTGCCCCTGCTGGCCAGTGCCCTATCATAGACCCTCGCTGGGAGAGTGATGAGGGTGTCCCTATTGATGCCATTGTATTTGGTGGCAGAAGACCAGAAGGTGTGCCTTTGGTGTATGAGTCATTTAACTGGCGCCATGGTGTATTTGTGGGTGCAGCCATGAGATCTGAATCCACGGCCGCTGCTGAACATAAAGGTAAAGCAATCATGCACGATCCCTTCGCAATGCGTCCTTTCTTCGGCTACAACTTTGGCGACTATCTGGCCCACTGGTTGAGTATGGAGACGCGCAAAGGCCCGACCCAGCTCCCTAAGATCTTCCATGTCAACTGGTTCCGGAAAGATCAGAAGAACGGCTCTTTCCTGTGGCCAGGGTTTGGAGAGAACGCCCGTGTCCTCGAGTGGATCTTCAAACGATGTGGCCGTACCAGTGAAGATGAGGCTGCCACCAAGAGCATTGTGGGATGGATTCCACAAAATGGTGCCATAAACACAGAAGGCCTGGGTGGGAATATCGATATGGGTGCCCTCTTTGACCTGCCCAAACCCTTCTGGCAAAAGGAAACACAGGAGCTTCGGAACTACTTCACCCAGCAGGTTGGAGCTGATCTACCTGCACAAGTGGAAGGAGAGCTGAGGGCACTGGAGGAGAGAGTTAGGAATTGAACAGATGCTACATTACATTGATGTTGAGTAGATGTGAGGAATAGAATGGGTTGAGGTGGAAGTAACTGTTTTAATGTGACTGACTGTTGCACTGCAGTGGACACTGCATCTGAGAAACACAAAACCAGAACGTTCACTAGATGCCATCACTGGTATCAATTCCAAGTGCCATATTTTATCTTAAGTAGAAGCTAAAAACTCTATTTAATGTTTACAAGCTATCCAGCAAAATGCCATTTTAGATTATTTTCAGTTCAGACAAGACCACATGATGAATTTAAACCACGACATCTTAAAAATGTATAGTTTTATGAGTACACTACCTATTATGTAGCCATTTTAAGCAAAAATATCAGACGTCTTTAAGGAAAGCACCAATATCATCCATTTGTACTTGTTACCTTATGAACACCGAAATTTTTATTTCCAAAGAATTTGCCTTTTGTTGGTGATTCAGGTTGAGCTAGGGTTGAAGGATCTGGACCAAAGAGTACCAAAGAGTCTCAGTCATTGAACGTGTGTATGTTTTTACCTGAGCTGACTGAATAAA

Function

symbol description
pck2 Predicted to enable manganese ion binding activity and phosphoenolpyruvate carboxykinase (GTP) activity. Predicted to be involved in several processes, including cellular response to hormone stimulus; gluconeogenesis; and monocarboxylic acid metabolic process. Predicted to be active in cytosol and mitochondrion. Is expressed in extension; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human PCK2 (phosphoenolpyruvate carboxykinase 2, mitochondrial).

GO:

id name namespace
GO:0004613 phosphoenolpyruvate carboxykinase (GTP) activity molecular_function

KEGG:

id description
K01596 E4.1.1.32, pckA, PCK; phosphoenolpyruvate carboxykinase (GTP)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_00029420_00038887.mRNA True 2429 mRNA 0.49 9 28870 38887

Neighbor

gene id symbol gene type direction distance location
CI01000018_00064269_00068791 NA coding upstream 24698 63585 ~ 71076 (-)
CI01000018_00071464_00083422 DCAF11 coding upstream 32521 71408 ~ 83422 (-)
CI01000018_00207988_00210462 NA coding upstream 169083 207970 ~ 212329 (-)
CI01000018_00229092_00242308 NA coding upstream 189935 228822 ~ 242391 (-)
CI01000018_00259118_00271046 RDH10, RDH10A coding upstream 219000 257887 ~ 271454 (-)
G102344 NA non-coding upstream 11879 50766 ~ 51143 (-)
G102402 NA non-coding upstream 124908 163795 ~ 164708 (-)
G102403 NA non-coding upstream 126336 165223 ~ 165665 (-)
G102445 NA non-coding upstream 200669 239556 ~ 337952 (-)
G103842 NA other upstream 1920610 1959497 ~ 1960058 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other upstream 2347321 2389201 ~ 2488018 (-)
G104968 NA other upstream 3443217 3482104 ~ 3500514 (-)
G105104 NA other upstream 3968810 4007697 ~ 4017817 (-)
G105200 NA other upstream 4204580 4243467 ~ 4246010 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023344 pck2 coding NC_007135.7 CM002908.2 12920019 ~ 12938922 (-)