CI01000018_04307560_04321214 (QTRTD1, QTRT2)


Basic Information

Item Value
gene id CI01000018_04307560_04321214
gene name QTRTD1, QTRT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4306921 ~ 4322286 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_04307560_04321214.mRNA
AAAATTTAGCTTCATCAAAACATGTACTTCAGTCAGAAACTTTTCACGCAGCAATGGAATTGTGGGATTTGTAGTTTGCGCAAAGTGACGTAGCATGAGTTGGTGCCTAAAAAGAACTACTTATCCCAACAAGAACTGATTAGGCCTGAAGCGTCTACTTTGAAACCATGGAAACAGTTGTTACGTCAGTTACCATACACATGAATGAAGCAACTTCGGCCAAATAAAGTAGCGTATTTAAATATTATACGTTCATCTTAATTACAACGTGTTTATATAATACAAATAAGATTTTATCTTTTATAAAAAAAAATAACATATTAATGAAGCTGCTTATATGTACACAATAATACATTTGATTTATTTTTATTTTTATTTATTTAGTTAACGTTTGTTTTCAAGCAACTAAAATGTGTGTTTTTAATGATTTTATTTTAGCTTTAGTTAACTATAATAACCCTGATCTGAATGCGTTCTGTTTTACGAGCTCTCTTTCAGGACTTAAGCAGAGAATACAATAAACAATATGCAAAAGAAACCCTTAATAAAATAATTAAATTGATCAAATAAATAAATTACCCATCCAATTATGCAGTCACATGAAATGAACAGCTCTCTGCCGTAGAAATGTTATGACGTCGTAAATGTGAGACGCAAGTCAAAGCGCTACGGAATATTTCTGCGACTTGCAGTTCTTCTCACATGTTCTGCTTTCTGAAGCAGCTAAGAGCAAATTGGTAAGCTTGAGAAGCTGTTACAGCGTTTTAGTAATTGTCGCATATGACATTTTTAATATTCACTGCTAACAAGTTATTGCGGCGTACTGTACTCGCTGTGTAGTGAACTTGCTTGATTTTATATTGGAAATTACATTCAAGTATGAAAACTAGACAGTAATGTCTAATATATTTAATTCATATGTTCATATTTGCATGTTAAGCACTGTATCCCTCTGAAAAATGAGAGAATAACGAGGTTGAACGTATTGTTTCTGCAGTTGATGAGCTGTCCTTTCCTCTCTCTCTAGATCTGAGAAACCTCCACATTAGGAAACTACAGCTCCACAAGTAGGATGAAACTGGAACTGTCACGAGTGGTACAGGGATGTCGCCTGGGGGTTTTGACTGGACTGGGAAAATCAGGGCAGCACTCACTAGAGTTGCCCGGCTGTCTCCTGTACACTCGCTGTGCAACTGTTCCCCATCTGACCCAGGACACATTACACACTTTAAGCGACCTGCCATCAGTCACACAAGTGTCTGTGGATAGCCTTGCAGAGCATCAAGAGGTTCTGGAGGAATTCAAAGAGGGTGTCAGAAAGTTTGCAGGTCTTCATGATACTGTGCTTTTCTGTTCTCTGCATGATTCTGCGAACACCAGTCCTGCTGGTCACGTCACCAACAAGACCGTGTCGGTGTGGGGCAGCGGTGGAAGGATAGAGCTGACGGCGGCTCGGTTCATGGCGATTCAGGCAGCTATCCAGCCGGACTGCTATCAGAGCATGGCGGACGGAGAGACCTGGCAGGTCAATACCTCTCGCAAGAGAGTCCGTAAAGCAGTGGACAGGACTCTGGCCCATCTGGATGAATGTCTGGTGTTGCACCAGAAAACACAGGAATTAAAACATGCAGAGATATTCGGGGTTGTGGAGGGTGGAGACATTATGGAGGAGAGGCTCCGGTCGGCACGAGAGACTGCCAAGCGTCCTGTGGGCGGATTTGTCCTGGATGGATTCCATTCTGCTGCCATGGACCAGGATGTGAGGTCTCAGCTGATTAGAGCGACAACTGCAGAACTTCCCCAAGAAAAACCCAGGTTGGTGTTGGGTATTGGCCGTCCTGATGAGGTCATCAGCTGTGCTGAAGCAGGAGTCGACCTGTTTGAGAGCGTCTTCCCCTTCCAGGTGACGGAGCGGGGCTGTGCACTCTCCTTCGACTACACCATTGATCCTGACCCTGAGACGGCAGTGCTGGAACTCAACGGAGAGATGCCTGCTGTCAAGAAGCTGAATGCGAATGGAGATGAAAATATGACGCCTTTCGAAATGAACCTCAAAGATAAAAGGTACCAAGATGATTTCCGCCCACTTGTGGAGGGCTGTGGCTGCTACTGCTGTAAAAAGCACATGAGAGCGTATGTTCATCATTTATTGGTGACCAACGAGCTGCTTGGTGGTGTTTTACTCATGCTGCACAACATGGCACATTACCTAGGGTTTTTCAAAGCGCTGCGGGAGGCAATAGCCAGCGACCGTCTGCAGGACTTTAAAAATAGAGTGCTCTGTTGCAGAGAAGGTGATTGAAATGATTGAAGGACTTTGGGCAAAAAGAAAAGATGAAAAAAGAAAGAACAAAAGAACACCTACATGAGAGCGTACTTAAGGCTTTGATGTGGTTTCATGAATATAAAGCTGGATTCTGATGCACATGCTCTTGCCATGCAAAATATCAGACAAAAAGTGCTAATGTGAGTGACATGGCAAACCTTTTAAATTCCCATGGCTCATCTTAGAGTTCACTTAGAGTTGGATTTAAAATTTGCCGTCTGCTGCATCAAATGAACAATTTCTCTCAGAAGGAGCATAAATAATGGAGAAAAATTACCTTTTTAAAAGAGCAGCTCTTGCTCAAATTCTCACTTTTTCAAGCCCTGAAAAATTTCCACCTGCTGTTTTCCTCAGCACATATTTTTCTGACTGGTTATACATTTATTTTGGAAAATGCTGCATTTCTTTCTTTCTTACAATTATGGTATTGTATAATAATATTTATTATTGTGCATTATTATTATTATTGTATATAATTGTGATGCTGTTTAGATTAACATTTTGCCCTTATGTTAAGTTTTAAACTTCTGCAAATCTAGCTTACTGACTTTTTTGTATTTGATTTTTCCGATCTTTACATTCCTCTTCATTAAGTATTTTTAACTTTACAATAAA

Function

symbol description
qtrt2 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in tRNA-guanine transglycosylation. Predicted to act upstream of or within tRNA modification. Predicted to be located in mitochondrion. Orthologous to human QTRT2 (queuine tRNA-ribosyltransferase accessory subunit 2).
qtrtd1 queuine tRNA-ribosyltransferase accessory subunit

NR:

description
Qtrtd1 protein, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K15407 QTRT2, QTRTD1; queuine tRNA-ribosyltransferase accessory subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_04307560_04321214.mRNA True 2941 mRNA 0.41 8 4306921 4322286

Neighbor

gene id symbol gene type direction distance location
CI01000018_04248388_04258010 KPNA1 coding downstream 48883 4248122 ~ 4258038 (-)
CI01000018_04239141_04241413 CCDC58 coding downstream 65508 4238253 ~ 4241413 (-)
CI01000018_04231186_04233076 NA coding downstream 73845 4230919 ~ 4233076 (-)
CI01000018_04221457_04229417 NA coding downstream 77504 4221236 ~ 4229417 (-)
CI01000018_04118240_04160401 VIPR1B, VIPR1 coding downstream 146520 4117987 ~ 4160401 (-)
CI01000018_04336914_04342114 NA coding upstream 14303 4336589 ~ 4342114 (-)
CI01000018_04344907_04359005 GRAMD1C coding upstream 21805 4344091 ~ 4359005 (-)
CI01000018_04361150_04364887 ATP6V1A.L, ATP6V1AA, ATP6V1AB, ATP6V1A coding upstream 38333 4360619 ~ 4364887 (-)
CI01000018_04397198_04411105 BOC coding upstream 74363 4396649 ~ 4411105 (-)
CI01000018_04464837_04473051 NA coding upstream 142352 4464638 ~ 4473051 (-)
G105277 NA non-coding downstream 20929 4285739 ~ 4285992 (-)
G105185 NA non-coding downstream 68786 4234605 ~ 4238135 (-)
G105263 NA non-coding downstream 88012 4218678 ~ 4218909 (-)
G105261 NA non-coding downstream 95663 4210897 ~ 4211258 (-)
G105259 NA non-coding downstream 99784 4206905 ~ 4207137 (-)
G105304 NA non-coding upstream 109905 4432191 ~ 4432482 (-)
G105306 NA non-coding upstream 122516 4444802 ~ 4445367 (-)
G105307 NA non-coding upstream 131975 4454261 ~ 4454478 (-)
G105213 NA non-coding upstream 262342 4584628 ~ 4587775 (-)
G105199 NA non-coding upstream 290411 4612697 ~ 4615380 (-)
G105200 NA other downstream 60911 4243467 ~ 4246010 (-)
G105104 NA other downstream 289104 4007697 ~ 4017817 (-)
G104968 NA other downstream 806407 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 1906018 2389201 ~ 2488018 (-)
G103842 NA other downstream 2346863 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 532795 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1569050 6020861 ~ 6025876 (-)
G106538 NA other upstream 2208161 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 2318326 6639207 ~ 6649971 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location