XLOC_008295 (igsf5b)


Basic Information

Item Value
gene id XLOC_008295
gene name igsf5b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5973909 ~ 6017920 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016670
cagttttatattttgtgGCAATTGCACATATTTCCTCTTCGGTGTCCTTGCTGAGCAGAACAATGGCCTGACTGTATCTCTGACAATATGCACATCCACATCCTCCAGCTGTGTGTCATCCAAGCTGCAGCCTCTTATATCTATCTAGAACCCAGGAACGTGAGCGTGTTGCGAGGCAGCGAGGTCCGCTTTAACTGCAGCACCACTGAATCCTGGGACGTCATGAATTGGCGGTTGGGCGAAGACACAATACTGGTCATTTCTGTGGATCATGGTCTTCTGTCCAGATCTGAGAGCGTCTCCACAGTCAATCACTCCATGACCTCTCTGACAGTGTGGGAGTTAATCCTGAGCAACTCTTCGTTCAGTCAAACAGTCCAGGAGATCAGATGCGAACTGCTTCCTAAAAATCTCAAATCATCATCGGCCCTGTTTGTACAAGaaaaaggaTGTGTCAGGATTTTGGAGGGTGACCTGTCAGTTCAACAGGGAGTGTTTGTCACCTTCCATTGCCAAGCTATTGGTTGGTATCCGGAGCCTTCGGTGTTGTGGATGGTCAATGGCACCAGCGTGGACAGAGGCGACTACAACACCAGCAGTATTCAAGGAACCAACGACCTGTTTAACTCCACCAGTGAGCTTAAGTTAGAAGCAGACACCAGCACCACAGTCGAGTGTTGGGCATCTGTGTCTGCTCCTCTGTCTCGGCAAAACAGCAGTGTCAAATTTACTGTAGTGTCACCAAAACCCACACAGGACTACACAGTTGTGATCGCTGTAATAGTGTCGGTGTGTACAATCATTCTGCTGGCAGTTCTCATCCTGATCCTCTGCTACAGAAAAAAACTGACGAAATCAAGCTCTGAAAATAAAGCCAGCTCTTACTCTTCATGGACTGACAATTTAAGCAGTGAGAGGAGGTCTGTTGCTGATGAAACCAGTGGAAAAGTGAATCTAGGATACCACACTGAAGACATAACAAGTAACAGCACTGAAATACATCTCAAAACACAACCCATTAATCAAATGATGTGTTAAGTAAAAACAAGTGGGGATGATGATGTCGAGTTAAAGTGCGTAGCATAAGTGGTGAACCCTTATAAAAATGAACAATTCTATCCACTTCAAAGTGAATATAGCCAATAATTGTTGGTGccgtagggatagtttacagtttaacccaaagaatgagcagtctggtagatgaagaagagccggagtcagagatttaaataaataaatcaagtttactgaagatagtttgcagtttcattcgcagaagccagcttcaacactcgcaatgagttcctaggccgctctgcttacaatcaccaatcaataacaattatactctcacataacgtcattaactgcgtcacacatacaggtgttctaacctgattggttaaaacacagataaactaggaaaatttccacatggggttcgtgcgtacaattctgaacaatatctaaacataaacgtcaggcatcctttagactgattagagctgactccagacctgtgaaatggatcaacaatcaaatagaacacacacacttaaagtataatctgtttctaaTCCAAGACTGACTGTACTCTCAGCcttctttatcaaaactggtttaaaaccggtataatctacattcaggcagttataattgcttactacacaaagtctatcttgaataaaaaacGTTTAAATAATTcaccgtaaaaatagcaaaatcactttagacattttagacaatattaactcgtagaaataacaatagaaacagttgtttccagccctcagttccactcaaggtctccgtgacctctgacctagattggtggcttctgaaaataggtataaagagactggcaaatgcactgaacattcttatattaagcaatgtggtaacttattcattaattaaaatcaattcacagttaaatactgagaaacaggatgatgaaaaggataaatgttggtccatgatgagacggattggaaagcagaaatcagAATCCTTCAGTGCACCTAAACAAAACCATAACTTTATCCTTTAAAAGTTTGGCCACCTAACATCTCTAGGAATAGTAAGATAATTCAAATGAGttattgcataaataaaaaaactacaaagaGTCAACTCAGGGCGAagcagaggcgcagtaggtagtgctgtcacttcacagaaagaaggttgctgggtcgctggtttgagccttggttcagttggcgtttctgtgtggagtttgcatgttctccctgcgttcgtgtgggtttcctccaggtgctccggtttcccccacagtccaaagatatgtgatacaggtaaattgggtaagcaaaattttctgtagtgaatttgtgtgtggatgtttcccagagatgggttgtggctggatgggcatccgctgcataaaaacttgctggataagttggcggttcattccgctgtggcgaccctgaattaataaagggactaaactgacaggaaaatgaatgaatgagagtcaactcaattgtatatatttttttgggtcccactttatattaagtgtccttaactactgtgtacttacatcaaaaaataaatacaatgtacttactgtgattataatgtatttgagaacacttgtggtgcttttgagttgggatagaggttgggttatggacaggtttggtggtttgggtaggtttaagggagggttaaggtgtaagggatggtcaacagtgtatttacaaatgtaattacaaaagttaac
>TCONS_00016671
AACAATGGCCTGACTGTATCTCTGACAATATGCACATCCACATCCTCCAGCTGTGTGTCATCCAAGCTGCAGCCTCTTATATCTATCTAGAACCCAGGAACGTGAGCGTGTTGCGAGGCAGCGAGGTCCGCTTTAACTGCAGCACCACTGAATCCTGGGACGTCATGAATTGGCGGTTGGGCGAAGACACAATACTGGTCATTTCTGTGGATCATGGTCTTCTGTCCAGATCTGAGAGCGTCTCCACAGTCAATCACTCCATGACCTCTCTGACAGTGTGGGAGTTAATCCTGAGCAACTCTTCGTTCAGTCAAACAGTCCAGGAGATCAGATGCGAACTGCTTCCTAAAAATCTCAAATCATCATCGGCCCTGTTTGTACAAGaaaaaggaTGTGTCAGGATTTTGGAGGGTGACCTGTCAGTTCAACAGGGAGTGTTTGTCACCTTCCATTGCCAAGCTATTGGTTGGTATCCGGAGCCTTCGGTGTTGTGGATGGTCAATGGCACCAGCGTGGACAGAGGCGACTACAACACCAGCAGTATTCAAGGAACCAACGACCTGTTTAACTCCACCAGTGAGCTTAAGTTAGAAGCAGACACCAGCACCACAGTCGAGTGTTGGGCATCTGTGTCTGCTCCTCTGTCTCGGCAAAACAGCAGTGTCAAATTTACTGTAGTGTCACCAAAACCCACACAGGACTACACAGTTGTGATCGCTGTAATAGTGTCGGTGTGTACAATCATTCTGCTGGCAGTTCTCATCCTGATCCTCTGCTACAGAAAAAAACTGACGAAATCAAGCTCTGAAAATAAAGCCAGGTAAGACATGTTTGTGTATATTTGGTGCATGTTTGGGACCTTTCTATTATGACTGAACCTGCAGCActaccagtggtggaaagagtactgaaaaatcatactcaagtaaaagtactattacttgccaaAAAATGTAAAGCAAGCAGAGTAAGAGTATCTGTTGTAAACGttatatgagtaaaaagtagacctttcaaaagtactcaagagtagtgagtattatgctttaaaagctgatgcgtttacatgtaatttgtggatgtgtgtaaacgtaacattctgtagtgcatttagttattgcccagcagacacagaacatcataagatgttaataattAGATTTAGGttttgatgtcaggtgaccaaaattcaagtctagccagcgtctaaggataaGGTTATTTTGATGACCAATAACAACATCAACTGATGTTGATAagtggttgattttaggttgtgataaagaaagtaaccaaaattcaacatcgagccaacatcttcaACCCACAACatactgacgtcaaatactgacatttatttgtcagctATGCCagccaaaatctaacatctgatagacatcatagtggaaacatccacacaaggtcaagctgtaacatcaatagacattgatatttggttgattttaggttggacgttggacattgacttATATAGGCCTGTCGTTGGGTTcggatgtcaacctgatttttatttccaaacaaaaggcAACATCTCCACGACGTTTGCGTACAACATCAATCTGTCATCATGTTGaaatcttgtgcctgctgggtgtttaaagggccatgacaccccccactttcggttaaagtctacttcagaattttttcaaaagatgcatgattaatgtgGAGCTccgcgtggagctccgcgagcatcgggcaggagtgggcgtagccagcaggggagaacgtgagcgaacaactgttgtagTCAGTTAGCTCAGAAAAtaagacaaaccgtgaggagacgcatgagtttatagtttacaaagttaaaatgcaaagaaatgaacagtgatttagtgccctgctacatttgttattcgtaatttcatatacacaaccacaatttatatcattataaagataaatgtgttcatgtaaaccctataaatgaggacttctccctcgatccctgtatccagcagactcagtgcagcaggtctcctgacctgtctattttaaccattagccctgctggtaatctggaggatttaggcaaacacagcagcacagtgatgtgtctgaatgtgaacgaactcctgataaaagacatttacatttacatttacatttagtcatttagcagacgcttttatccaaagcgacttacaaatgaggacaaggaagcaatttacacaaccaagagcaacaatgaataagtactaaaggcaagtttcaggtctgtaaagtctaagaagggaagtgttagtagttttttttttttttttttttttttttttttttttttttttttttNgtgtacaattagtgtgatattcaaagaggcaattgcagcttaggaagtgaagtggagactaaatagttgagtttttagtcgtttcttgaaaatagcgagtgactctgctgttctgatgcagttagggagttcattccaccaactgggcagattgagcgtgagcgttcgcgaaagtgattttttccctctttgggatggaaccacgaggcgacgttcattcacagaacgcaagtttctggagggcacatagatctgcagaagtgagtgcagataagaaggtgctaggccagaagtcactttgtaggcaaacatcagagttttgaatttgatgcgagcagcaactggcagccagtgcaaacggactagcagtggagtgacatgtgctcgtttaggttcattgaagacaactcgtgctgctgcattctggagcagttgaagaggcttgatagagttagctggaagcccagctagtagagagttgcagtaatccagtttggagagaacaagagcttgaacaaggagttgagctgcatgttcagataagaagggtcggatctttctgatgttatagagtgcaaatctgcacgatcgagcagttctagaaatgtggtcagagaagtttagttggtcatcaatcgttactccaaggcttttcaccattttggatgcagtaatggttgccccatccatctggattgaaaagttatggtgtagagtcgggttggcagaaactacaagcatttccgtttttgcgaggttcagctgaagatgatgatctttcatccagtgtgaaatatccaacaggcaggctgagatacgagctggaaccgagggatcatcaggatgaaaagagaggtatagctgggtgtcatcagcatagcagtggtaggagaatccatgtctctggatgactggtcctagagatgatgtgtagatggagaagagaagtggcccaagaacagagccttgaggtaccccagtgtttagatgctgtaggttggacacctctcccctccaagacaccctgaatgacctgtcagagaggtaagatctaaaccattgtataacagtgcccgcaacgcccagtgactcaagcgtagatagcaggatctggtggttgacagcgtccgccattctctaattctcgtgctgctctcccgacaaaaatgctagcagcacacacacagctttgctgtatgatcggccctgacaagatcgatGGGGAAAACATGcgacaaaccccgtggatcatggaaacaaacgcatatgagccttcatgaaagGCTAAAAACTGTGTGcttgggtccgtgtctcacagctcgggcttgactctggcaagtctcatgaataattaagcagcaggctcttctcataggataagaaaactccgctatgaataataatgagaaaccgacgcgtcatcattgcacttgcggtactgcgctacgtcgccgattttgatccgccccaaaaatcattttaaacccggaagctgaaattagctgacaaaagctcaaaattatccagttttccccacaattaaagctgacaggtgctaacattgtcttaactgatgctcaacacacacaaatctgttaatatacaaaaaaggttctccagtgtgtcctgaacctttaaggccattttgtcatcatacagtaaacatctgacatcttctcatcagtgacatgcatctaaacattctctgggtcaatgcgtgaaaagattttggacatcttcttgaacacttttaatgcttccaaacagtttgctgcaattataaagcacaAATGTCATGAGGTAGTTTATTATGATGCAGTTTACCTTCTATGTtccatttgattggacagaaatcacaggagtgatttttctaatcctcatagacaagaaaaaaatcaaGTAGAGACTGCAGgttggagtaaaagtaccaatactgcactaaatatgtactcaagggaaagta

Function

symbol description
igsf5b Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IGSF5 (immunoglobulin superfamily member 5).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-1011 Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IGSF5 (immunoglobulin superfamily member 5).

Ensembl:

ensembl_id ENSDARG00000090953

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016670 False 2755 mRNA 0.41 6 5973909 6017920
TCONS_00016671 True 4286 mRNA 0.43 5 5973967 6014317

Neighbor

gene id symbol gene type direction distance location
XLOC_008294 sh3bgr coding upstream 15106 5923851 ~ 5958803 (+)
XLOC_008293 get1 coding upstream 57089 5901970 ~ 5916820 (+)
XLOC_008292 BX088654.1 coding upstream 118684 5855111 ~ 5855225 (+)
XLOC_008291 NA coding upstream 120567 5841557 ~ 5853342 (+)
XLOC_008290 mrap coding upstream 343457 5628363 ~ 5630452 (+)
XLOC_008296 PCP4 coding downstream 91941 6109861 ~ 6118668 (+)
XLOC_008297 NA coding downstream 141089 6159009 ~ 6160503 (+)
XLOC_008298 bace2 coding downstream 441927 6459847 ~ 6493615 (+)
XLOC_008299 CU655863.1 coding downstream 541130 6559050 ~ 6559185 (+)
XLOC_008300 nop53 coding downstream 634476 6652396 ~ 6666303 (+)
XLOC_008463 BX663520.1 misc downstream 15234271 21252191 ~ 21252282 (+)
XLOC_008289 NA non-coding upstream 502401 5468098 ~ 5471508 (+)
XLOC_008278 NA non-coding upstream 717127 5256501 ~ 5256782 (+)
XLOC_008271 NA non-coding upstream 1419481 4553896 ~ 4554428 (+)
XLOC_008301 CU633984.1 non-coding downstream 660601 6678521 ~ 6727082 (+)
XLOC_008302 CU694757.1 non-coding downstream 752666 6770586 ~ 6772120 (+)
XLOC_008304 NA non-coding downstream 767729 6785649 ~ 6786055 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000092_03007267_03029327 NA coding CI01000092 null 3007267 ~ 3029327 (+)