CI01000026_11456632_11473446 (TBC1D14)


Basic Information

Item Value
gene id CI01000026_11456632_11473446
gene name TBC1D14
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11456632 ~ 11473653 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_11456632_11473446.mRNA
ATTCCCAAGTCTCATCAATCAGCAAGTCTTCACAGTGTTTGCAGAGTGTTTCCAAGCCTCTCACCCAAAACCATGTCAACCATTTTATGCCCTCAGACTCTCAGCCCCCACATGGCTCCCTCAGCTGCAAATTATTTACTCCATTTAACGGCGCATGTGATGAGGATCGCAGTAGCCTGGCCTCTCAGGACTCTGGTATCCCCACCCTTGAGATCAACCCACCTGAGCACATTCATGCTCGAGTCACCACTGCTGAGCTGGTGGTTCCACCTCCACATGATGATAATCCAGCAACACTAAACTTGGATATTTCAGATAGCTCCTTACTCAAGTCTTCCACCTTCCCCCGTTGTGATTTTGATTTGGTACGTCTCTACGGTGCAAGTGGGCTTTCCAGTGCGGCAGGCAAGGGTACATTGAACCGCAGTGATGATATTTCAGTGTGCAGTGTGTCCAGTTTAAGTACTGAGTTTTCTGCCACATTGTCAGTCAGTAATGAGGACTTCCTAGACTTCATGGTTACATCCGAGTCCAGCGCCGTTGTTACATTTGAGAATGATGATGTCTTGCACCGTTCTGACAATTCACTCTCACCCCCTACTGACCTACACGGCAAGCTAAGCAGCCCACAACGGCAACCATTGGGGGTCTCTACACCTCATGAGGCTAGGACCAAAAGACTGGGACCACTCGCCAACTTCTTCCACAGGAGTCTTTTTGCTAGGAGGATGAAGGACACAGGTGCACTGGAAGGACAGCGAGAGCCTGGGTGGAAGCTGTTTGGTATAGTTCCACATAAAGAACTTTCAACCAAAGACTCCAGGAAAATACAAAAGGAATATGAAAGAAGGAGTGAACACACAAGCAATTCCACATCTCCCAAGAAGAATGTAAGAAAGAGCCTGGACTTCGAGCCACTTTCAACCACAGCTCTTATACTGGAGAACCGTCCAGCGAATCTTCCTGCAAAGCCTGAGGAAGAAGCCCAGAAACACAGACAAGAATATGAGGAGATGGTGGCTCAGGCCAAAAAGAGAGAGCTGAAAGAGGCCCAGAAACGGAAAAAACAGCTAGAGGACAGGTGTAAACTAGAGGAAAGCATCGGCAATGCTGCTCTCATCTGGACTCAGGAGATATTACCCAACTGGCAAAGCATGTGTTCATCTAAGCGGGTGAGAGATTTATGGTGGCAGGGTCTGCCACCCAGTGTGAGGGGCAAAGTCTGGAGTCTAGCGATAGGAAATGACCTGAACATCACAGATGAGCTGTACAACATCTGTTTGGCTAGAGCCAAGGAGAAGTGGAATGCTTTTGTAGCCCCAACGGCTGCTGCAGAAACAGAGAGTGAAGATACAGGCTTGTCTAATGCTGATCGAGAGGCCAGTCTAGAACTGATCAAGTTAGATATTTCCAGAACCTTTCCCAGTCTCTGTATATTCCAACAGGTGCAGGGAATGTCCTTTATAGCAGCAGTGTTGATCCTCAACATGGACACTGTTGATGCCTTCATTGCATTTGCCAATTTGTTGAACAAGCCTTGTCAAATGGCTTTCTACAGAGTAGACCACAGCCTTATGTTGACATACTTTGGAGCATTTGAAGTGTTCTTTGAAGAGAATCTACCAAAGCTTTTTGCACATTTCAAAAATAACAACCTGTCCTCTGATATTTATTTAATTGACTGGATCTTCGCCTTGTACAGTAAATCGCTCCCACTGGACATTGCGTGTCGTGTGTGGGACGTGTTTTGTCGTGATGGTGAGGAATTTCTCTTCCGCACTGCACTGGGTATCCTGCGTCTTTACGAGGACATCCTCACACACATGGACTTCATCCACATCGCTCAGTTCCTGACACGCCTGCCGGACTACATCTCTGCTGAGGAGATCTTCTCCAGCATAACCAACATCAACATGAACAGCAAGAACAAGAAATGGCCACAAAGACTAAGAGAGAAACTCATGTTGACTGTGCATGGGTACTCCTTCATACCTCTGGTACCTCATCAGAGATTATCAGCTCAAGTGGCCACTGTATGTGTCCTCTTCCATACAAACTGATGCATGGGAATACAAACTGAGCTCACAGGCCTGGAACGGAGGCAACACGTCACATGAATGTACACTCCATCAATTAGGTGTGGCAATGTGAGTTTGTGAAGCTCTAAACTATTTCATGTCTGTCCACTATTTTCACCTTCACTTTATCTCTTTGGCTTTATCCTTTTGTCTCCCTCACCTTAAACATGGCATTTTCGTTTAAGCGAA

Function

symbol description
tbc1d14 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity; intracellular protein transport; and regulation of autophagosome assembly. Predicted to be active in autophagosome and recycling endosome. Orthologous to human TBC1D14 (TBC1 domain family member 14).

GO:

id name namespace
GO:0031338 regulation of vesicle fusion biological_process

KEGG:

id description
K20167 TBC1D14; TBC1 domain family member 14

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_11456632_11473446.mRNA True 2267 mRNA 0.47 12 11456632 11473653

Neighbor

gene id symbol gene type direction distance location
CI01000026_11436071_11446054 KIAA0232 coding upstream 10310 11435501 ~ 11446322 (+)
CI01000026_11403059_11415298 PTPN5 coding upstream 41120 11403059 ~ 11415512 (+)
CI01000026_11298219_11305000 NA coding upstream 151619 11298219 ~ 11305013 (+)
CI01000026_11266022_11278889 NA coding upstream 177733 11266022 ~ 11278899 (+)
CI01000026_11262923_11264188 TNNI2A.4, TNNI2B.2, TNNI2B.1 coding upstream 192098 11261081 ~ 11264534 (+)
CI01000026_11483300_11485455 TADA2B coding downstream 9647 11483300 ~ 11486080 (+)
CI01000026_11497016_11677778 SORCS2 coding downstream 23363 11497016 ~ 11677778 (+)
CI01000026_11698637_11702653 MAF1.L, MAF1 coding downstream 224984 11698637 ~ 11703649 (+)
CI01000026_11705009_11707949 NA coding downstream 231356 11705009 ~ 11708076 (+)
CI01000026_11756587_11788914 ESYT2B coding downstream 282934 11756587 ~ 11789072 (+)
G133536 NA non-coding upstream 61388 11395044 ~ 11395244 (+)
G133512 NA non-coding upstream 87333 11368840 ~ 11369299 (+)
G133533 NA non-coding upstream 94405 11361816 ~ 11362227 (+)
G133528 NA non-coding upstream 102181 11354162 ~ 11354451 (+)
G133530 NA non-coding upstream 107026 11349312 ~ 11349606 (+)
G133542 NA non-coding downstream 2464 11476117 ~ 11477544 (+)
G133564 NA non-coding downstream 128549 11602202 ~ 11602886 (+)
G133572 NA non-coding downstream 184877 11658530 ~ 11659089 (+)
G133594 NA non-coding downstream 258158 11731811 ~ 11732814 (+)
G133596 NA non-coding downstream 260092 11733745 ~ 11734005 (+)
CI01000026_11241496_11246081 NA other upstream 201559 11241496 ~ 11246204 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 377552 11075784 ~ 11079080 (+)
G133192 NA other upstream 1294671 10159819 ~ 10161961 (+)
G132667 NA other upstream 1887472 9568739 ~ 9569160 (+)
G131077 NA other upstream 2949845 8501408 ~ 8506787 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location