Gene
RNA
| Item | Value |
|---|---|
| gene id | G133530 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 11349312 ~ 11349606 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU151815 | True | 295 | lncRNA | 0.34 | 1 | 11349312 | 11349606 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_11298219_11305000 | NA | coding | upstream | 44299 | 11298219 ~ 11305013 (+) |
| CI01000026_11266022_11278889 | NA | coding | upstream | 70413 | 11266022 ~ 11278899 (+) |
| CI01000026_11262923_11264188 | TNNI2A.4, TNNI2B.2, TNNI2B.1 | coding | upstream | 84778 | 11261081 ~ 11264534 (+) |
| CI01000026_11241496_11246081 | NA | coding | upstream | 103231 | 11241496 ~ 11246204 (+) |
| CI01000026_11239339_11240254 | TNNI2A.4, TNNI2B.2, TNNI2B.1 | coding | upstream | 108879 | 11239339 ~ 11240433 (+) |
| CI01000026_11403059_11415298 | PTPN5 | coding | downstream | 53453 | 11403059 ~ 11415512 (+) |
| CI01000026_11436071_11446054 | KIAA0232 | coding | downstream | 85895 | 11435501 ~ 11446322 (+) |
| CI01000026_11456632_11473446 | TBC1D14 | coding | downstream | 107026 | 11456632 ~ 11473653 (+) |
| CI01000026_11483300_11485455 | TADA2B | coding | downstream | 133694 | 11483300 ~ 11486080 (+) |
| CI01000026_11497016_11677778 | SORCS2 | coding | downstream | 147410 | 11497016 ~ 11677778 (+) |
| G133529 | NA | non-coding | upstream | 388 | 11347963 ~ 11348924 (+) |
| G133523 | NA | non-coding | upstream | 6824 | 11340639 ~ 11342488 (+) |
| G133522 | NA | non-coding | upstream | 12481 | 11335470 ~ 11336831 (+) |
| G133521 | NA | non-coding | upstream | 15209 | 11333873 ~ 11334103 (+) |
| G133520 | NA | non-coding | upstream | 15625 | 11333341 ~ 11333687 (+) |
| G133528 | NA | non-coding | downstream | 4556 | 11354162 ~ 11354451 (+) |
| G133533 | NA | non-coding | downstream | 12210 | 11361816 ~ 11362227 (+) |
| G133512 | NA | non-coding | downstream | 19234 | 11368840 ~ 11369299 (+) |
| G133536 | NA | non-coding | downstream | 45438 | 11395044 ~ 11395244 (+) |
| G133542 | NA | non-coding | downstream | 126511 | 11476117 ~ 11477544 (+) |
| CI01000026_11075931_11078249 | MDK, MDKA | other | upstream | 270232 | 11075784 ~ 11079080 (+) |
| G133192 | NA | other | upstream | 1187351 | 10159819 ~ 10161961 (+) |
| G132667 | NA | other | upstream | 1780152 | 9568739 ~ 9569160 (+) |
| G131077 | NA | other | upstream | 2842525 | 8501408 ~ 8506787 (+) |
