CI01000026_11298219_11305000


Basic Information

Item Value
gene id CI01000026_11298219_11305000
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11298219 ~ 11305013 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_11298219_11305000.mRNA
GCCAGAGCCAGAACCACAGCCAGAGCCAGAAAAAGAGCCAGAGCCAGAGCCAGAGCCAGAACCAGAGCCAGAACCAGAGGTGCATGAGGAAGCTGTAGTTCCCCAGTACTTCACCCCAACCCAACAAAACTTTAACAACTACTGGCGGTACCTCCTCTTCGTTCAGGCCCATTATGAGACTGGTGTAGCAACACCAGATGTTGACAGAGCTTCGATTCATGCCATTTCAGTCCCTTATGAGGAGAAGCCCAAGTTCAAACCAAGTGCACCAAAGATCCCTGATGGGGAAAAGGTGGACTTTGATGATATCCAGAAGAAGCGTCAAAACAAGGATCTCGTTGAGCTGCAGGCCCTGATTGATGCCCACTTTGAGTGCAGGAAGAAGGAAGAGGAGGAGCTTATCGCTCTGAAAGAGAGAATTGAGAAACGTAGGGCTGAGAGGGCAGATCAGCAGAGGATCCGCGCTGAGAAGGACAAGGAGCGTCAGGCAAGACGTGAGGAAGAGAGGCTGAGGAAGGAGGAGGCTGATGCTAAGAAGAAAGCAGATGAAGATGCCAAGAAGAAGTCTGCCCTGACCAGCATGGGCTCCCAGTACAGCAGCTACCTGCAGAAGGCTGACTCAAAGAGAGGAGGTAAGAAGCAAACTGAAAGGGAGAAGAAGAAGAAGATTCTGGCAGACAGACGCAAGCCTCTGAATATTGACCATCTGAATGAGGACAAGCTGAGGGAGAAAGCTAAAGAGCTGTGGGACTGGTTGTACTCCCTGGAGGCTGAGAAGTTTGAGCACATGGAGAAACTCAAGAGGCAGAAGTATGAGGTAACAACTCAGCGTAAGAGAGTGGAGGAGCTCAGTAAATAGTGAGTAACTGGAA

Function

NR:

description
fast/white muscle troponin T adult isoform

GO: NA

KEGG:

id description
K12046 TNNT3; troponin T, fast skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_11298219_11305000.mRNA True 872 mRNA 0.50 9 11298219 11305013

Neighbor

gene id symbol gene type direction distance location
CI01000026_11266022_11278889 NA coding upstream 19320 11266022 ~ 11278899 (+)
CI01000026_11262923_11264188 TNNI2A.4, TNNI2B.2, TNNI2B.1 coding upstream 33685 11261081 ~ 11264534 (+)
CI01000026_11241496_11246081 NA coding upstream 52138 11241496 ~ 11246204 (+)
CI01000026_11239339_11240254 TNNI2A.4, TNNI2B.2, TNNI2B.1 coding upstream 57786 11239339 ~ 11240433 (+)
CI01000026_11203781_11212074 NA coding upstream 85637 11203781 ~ 11212582 (+)
CI01000026_11403059_11415298 PTPN5 coding downstream 98046 11403059 ~ 11415512 (+)
CI01000026_11436071_11446054 KIAA0232 coding downstream 130488 11435501 ~ 11446322 (+)
CI01000026_11456632_11473446 TBC1D14 coding downstream 151619 11456632 ~ 11473653 (+)
CI01000026_11483300_11485455 TADA2B coding downstream 178287 11483300 ~ 11486080 (+)
CI01000026_11497016_11677778 SORCS2 coding downstream 192003 11497016 ~ 11677778 (+)
G133501 NA non-coding upstream 41952 11256009 ~ 11256267 (+)
G133491 NA non-coding upstream 104394 11193361 ~ 11193825 (+)
G133454 NA non-coding upstream 144822 11144309 ~ 11153397 (+)
G133444 NA non-coding upstream 177469 11120509 ~ 11120750 (+)
G133443 NA non-coding upstream 178342 11119648 ~ 11119877 (+)
G133514 NA non-coding downstream 15852 11320865 ~ 11321130 (+)
G133515 NA non-coding downstream 16242 11321255 ~ 11321553 (+)
G133516 NA non-coding downstream 16791 11321804 ~ 11324137 (+)
G133519 NA non-coding downstream 27053 11332066 ~ 11332275 (+)
G133520 NA non-coding downstream 28328 11333341 ~ 11333687 (+)
CI01000026_11075931_11078249 MDK, MDKA other upstream 219139 11075784 ~ 11079080 (+)
G133192 NA other upstream 1136258 10159819 ~ 10161961 (+)
G132667 NA other upstream 1729059 9568739 ~ 9569160 (+)
G131077 NA other upstream 2791432 8501408 ~ 8506787 (+)
G133542 NA other downstream 171104 11476117 ~ 11477544 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location