Gene
RNA
| Item | Value |
|---|---|
| gene id | G133515 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 11321255 ~ 11321553 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU151797 | True | 299 | lncRNA | 0.42 | 1 | 11321255 | 11321553 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_11298219_11305000 | NA | coding | upstream | 16242 | 11298219 ~ 11305013 (+) |
| CI01000026_11266022_11278889 | NA | coding | upstream | 42356 | 11266022 ~ 11278899 (+) |
| CI01000026_11262923_11264188 | TNNI2A.4, TNNI2B.2, TNNI2B.1 | coding | upstream | 56721 | 11261081 ~ 11264534 (+) |
| CI01000026_11241496_11246081 | NA | coding | upstream | 75174 | 11241496 ~ 11246204 (+) |
| CI01000026_11239339_11240254 | TNNI2A.4, TNNI2B.2, TNNI2B.1 | coding | upstream | 80822 | 11239339 ~ 11240433 (+) |
| CI01000026_11403059_11415298 | PTPN5 | coding | downstream | 81506 | 11403059 ~ 11415512 (+) |
| CI01000026_11436071_11446054 | KIAA0232 | coding | downstream | 113948 | 11435501 ~ 11446322 (+) |
| CI01000026_11456632_11473446 | TBC1D14 | coding | downstream | 135079 | 11456632 ~ 11473653 (+) |
| CI01000026_11483300_11485455 | TADA2B | coding | downstream | 161747 | 11483300 ~ 11486080 (+) |
| CI01000026_11497016_11677778 | SORCS2 | coding | downstream | 175463 | 11497016 ~ 11677778 (+) |
| G133514 | NA | non-coding | upstream | 125 | 11320865 ~ 11321130 (+) |
| G133501 | NA | non-coding | upstream | 64988 | 11256009 ~ 11256267 (+) |
| G133491 | NA | non-coding | upstream | 127430 | 11193361 ~ 11193825 (+) |
| G133454 | NA | non-coding | upstream | 167858 | 11144309 ~ 11153397 (+) |
| G133444 | NA | non-coding | upstream | 200505 | 11120509 ~ 11120750 (+) |
| G133516 | NA | non-coding | downstream | 251 | 11321804 ~ 11324137 (+) |
| G133519 | NA | non-coding | downstream | 10513 | 11332066 ~ 11332275 (+) |
| G133520 | NA | non-coding | downstream | 11788 | 11333341 ~ 11333687 (+) |
| G133521 | NA | non-coding | downstream | 12320 | 11333873 ~ 11334103 (+) |
| G133522 | NA | non-coding | downstream | 13917 | 11335470 ~ 11336831 (+) |
| CI01000026_11075931_11078249 | MDK, MDKA | other | upstream | 242175 | 11075784 ~ 11079080 (+) |
| G133192 | NA | other | upstream | 1159294 | 10159819 ~ 10161961 (+) |
| G132667 | NA | other | upstream | 1752095 | 9568739 ~ 9569160 (+) |
| G131077 | NA | other | upstream | 2814468 | 8501408 ~ 8506787 (+) |
| G133542 | NA | other | downstream | 154564 | 11476117 ~ 11477544 (+) |
