CI01000026_13744060_13791879 (CDH8)


Basic Information

Item Value
gene id CI01000026_13744060_13791879
gene name CDH8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 13744060 ~ 13791879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000026_13744060_13791879.mRNA
CTCCATACAGATTTGGACGTGGGGAATAAGAACATCAAGTATGTGCTGGCAGGGGAAGGGGCGGGCACCATCTTTGCCATCAACGAGAGGACGGGGGACATTCACGCCATGAAAAGGCTAGACCGAGAGGAGAAGGCCGAGTACACGCTCACGGCACAGGTCATCGACAGAGACTCCGACCAACCTCTGGAACCACCGTCAGAGTTCATCATCAAAGTGCAAGACATCAATGACAACCCCCCACAGTTCATTGAGGGGCCTTACAAAGGTTCAGTGCCAGAGATGTCCCAAGTGGGTACATCAGTTACGAGAGTAACTGCAACGGATGCGGATGATCCGGTGTATGGAAACAGTGCCAAACTGGTCTACAGCATTCTGGAAGGCCAACCTTATTTCTCCATCGACCAAACCACTGCAATCATTAGGGTGGCTCTGGCAGGGATGGATCGTGAGATGAGGGAAGAGTATCTTGTTGTCATTCAAGCAAAAGATATGGGAGGTCACATGGGTGGGTTGTCAGGAACCACCACTGTGACAGTCACTCTTACCGATATCAACGATAACCCACCAAAGTTCACAAAGGGCTCTTATGAGTTCAATATTCCTGAGGATCTTGGCATCGGGAAACCTGGAGGAAGAGTAAAAGCGAATGACAGAGACATCGGGGAAAATGCTAAATCAACTTACACCATCATAGGTGGAGACGAGAGGGATGTCTTTGAGATTGTCACTGATGCTCAGACTCAGGAGGGAATCCTCAGACTCAAGAAGCCTCTGGACTTTGAGTCAAAACATTTCTACAACCTAACAGTGGTTGCGACCAACATACGTGCCGATTCGATTACTGGTGGGCCCTACATGGACCAGGCCACGATCAAAATCGTTGTTGAGGATGCAGATGAACCCCCTGTCTTCACGAAGTCCACTTATCTCTTCGATGTGCACGAAAACGCTGCAATCAACACAGTCATAGGAGCGGTAGTGGCGACAGACCAGGATGCCCCACACAGCCAAGTCAGGTATTTTATTGATAGGCACACAGATTTAGAGAGGCAGTTTAACATTAACGTTGATGACGGGAAGATCACATTAGCTAAACCTCTGGATAGAGAGACGGATATGTGGCACAATATTACCGTGACAGCCACTGAAATTCGAAACCACAGCCAGATTTCCAGAGCCATAGTTGCAATTAAAGTGCTGGACATAAATGACAACGCCCCTGAGTTCGCCACCGAATATGAAGCTTTTCTCTGTGAGAATGGCAAACCTGGACAGGTGATTCAGACCATCAGCGCTGTGGACAAAGACAATCCTTCCCAGGGACACACTTTCCACTACAGCCTAGAGGTGCTTAATAATCCCAATTTCACCATCAAAAACAATTTAGATAACTCAATCAGCGTTCTTGCCAAGCATGATTCCTTTCGGCGTCAGAAACAAGAGATGTACCTCCTGCCCATCGTTGTGACTGACGACGGAGAGCCTCCGATGAGCAGCACGAACACTTTAACTATCCGTGTGTGCGGCTGCAGCAGGGAAGGCACTGTGCAGTCGTGTAACGTGGAGGCTTTTGTTCTACCCATTGGTCTCAGCATGGGAGCTCTGATTGCTATTCTAGCTTGTATAATTCTACTCCTCGTGATCGTGGTCTTGTTTGTGACATTGAGGAGACACAAGAACGAGCCTCTAATCATCAAAGACGACGAGGACGTGAGGGAGAACATCATCCGTTACGATGACGAGGGAGGCGGGGAGGAGGACACGGAGGCCTTTGACATCGCCACCCTGCAGAACCCAGATGGCATCAACGGCTATCTGCCCAGGAAGGACATCAAGCCTGACCTGCAGTTCATGCCCAGACAAGGTCAGCACTCGGGTCCGAACGGAGTAGACGTAGATGAATTCATCAACGTACGGCTTCACGAGGCAGACAACGACCCCACGGCTCCACCATATGACTCCATTCAAATCTACGGCTACGAGGGCAGGGGCTCCATTGCGGGCTCCCTGAGTTCCCTCGAAACGACCTCCTCGGACTCGGACCAGAACTATGATTACCTAAGAGAGTGGGGTCCGCGCTTCAGAAGACTGGGCGAGCTTTATTCCGTGGGCGAGAGCGACAAAGAGACT

Function

symbol description
cdh8 Orthologous to human CDH8 (cadherin 8).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06800 CDH8; cadherin 8, type 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000026_13744060_13791879.mRNA True 2133 mRNA 0.50 10 13744060 13791879

Neighbor

gene id symbol gene type direction distance location
CI01000026_13299234_13300178 NA coding downstream 443120 13298482 ~ 13300940 (-)
CI01000026_13082079_13210565 ITFG1 coding downstream 533495 13082079 ~ 13210565 (-)
CI01000026_13053390_13065531 NETO2 coding downstream 678529 13051213 ~ 13065531 (-)
CI01000026_13039331_13039570 NA coding downstream 704490 13039271 ~ 13039570 (-)
CI01000026_13033698_13034704 NA coding downstream 708440 13033625 ~ 13035620 (-)
CI01000026_14156809_14170720 CDH11 coding upstream 364470 14156349 ~ 14170720 (-)
CI01000026_14376741_14381102 NA coding upstream 584691 14376570 ~ 14382093 (-)
CI01000026_14680424_14682203 TK2 coding upstream 888480 14680359 ~ 14682203 (-)
CI01000026_14684215_14684738 NA coding upstream 892324 14684203 ~ 14685091 (-)
CI01000026_14697383_14715245 CMTM4 coding upstream 905164 14697043 ~ 14715245 (-)
G135243 NA non-coding downstream 90407 13653434 ~ 13653653 (-)
G135241 NA non-coding downstream 98961 13644780 ~ 13645099 (-)
G135223 NA non-coding downstream 123733 13620107 ~ 13620327 (-)
G135053 NA non-coding downstream 418659 13325191 ~ 13325401 (-)
G135043 NA non-coding downstream 439482 13304295 ~ 13304578 (-)
G135430 NA non-coding upstream 124578 13916457 ~ 13916873 (-)
G135431 NA non-coding upstream 125237 13917116 ~ 13917382 (-)
G135448 NA non-coding upstream 174078 13965957 ~ 13966225 (-)
G135456 NA non-coding upstream 188165 13980044 ~ 13980291 (-)
G135621 NA non-coding upstream 355759 14147638 ~ 14147877 (-)
G133802 NA other downstream 2436879 11301915 ~ 11307181 (-)
G133790 NA other downstream 2906455 10834015 ~ 10859589 (-)
CI01000026_10788054_10788652 CD59 other downstream 2953906 10787339 ~ 10789709 (-)
CI01000026_10347872_10351783 CEBPA other downstream 3395103 10347746 ~ 10351783 (-)
G132721 NA other downstream 4193416 9550030 ~ 9550644 (-)
G136110 NA other upstream 763038 14554917 ~ 14555436 (-)
CI01000026_16756776_16760261 RBPMS2A, RBPMS2B, RBPMS2 other upstream 2964850 16756729 ~ 16761341 (-)
G137667 NA other upstream 3014485 16806364 ~ 16808372 (-)
G137914 NA other upstream 3191372 16983251 ~ 16984352 (-)
G137967 NA other upstream 3276469 17068348 ~ 17069433 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location