G130735


Basic Information

Item Value
gene id G130735
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 7598433 ~ 7600870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU148641
AACCCAGCATTTTTTAGAGTGTACAATTTAAATAGCATTAGTATTTAAAGATTTCTACTTTGCACAACTCATTAGCGTGTAATTGAATGTACAACAAAGAACATTTAGTGCCCTGTTGATTACAGCCTTATCTTAGGGGAAGACTCATTCGCTCAATCACGGTCACAGCCTGATTGCAAAAGCCTCAGCAATCATTGATCCTTCAGCAAAATAGAGTTTTGTTTCTTTTGACCTCAGAGTCCAGCTAATGCAGTCTTGATACCTTCCGGCCAGGATTTAGAGCAATGTGTAATGATAAAGAGCTATGGAAGCTAAGTCTGACCCATGGCAAGCTGAAATCCATGATATGATCGCGGCCTTCCAAATAGGATCAAGTCTCACATCAAACTTTAAAACAATAGCGTTTCCAGCCTATCAATGCCCTGACCTTTTATTGGCACTAAAGCTGCCCTGTCAATGGAACAAATGTGTAGTCTGAAAGAGCAGTGGAAGAATGCCACCTTAAATGTTTGCTTTGCTCACTTTGTAAGAGGACAAAAGCGAAATGCTTAAATACGCAATGGGGTTGTGCACTATTGAATGAAGACCATTCTCCTCTCAAACTACAATTGAAACAGTCAGGTTTTAACCTCCTGATGTTAGTGAAAACTTACTAAGAGCTCTCTGTTTAATGATCAGATTATATTACTCAAATAACAATTGTCAACTGAGGAGTTATAGTTTTGATAGCTCTAAAATGTACAGTTTGTGTAAACAGCTGAATCCACAAGTGGCTCATAAACACACAATCAAACCTAATGAGTGGTTAACCCTTCGTGCTCTGAATGAGTCATCAGCTGCTCTGCATGACATTGATTGTGTGTCACACAGCACAATAAGTATGGCTGAGTCTCATTGTTCAGAGATGGAATTGTAGTGTATCTAGCAGTAAAGTGCTGATTACAAGAGAGATGTAACTGCAGTTTGTCGTCCCTCTGTGGACCTGCTGTTAAGGTCTGGTGCAGTATTAAAAAAAAACACAAAAAAAAAAAAAAAAAAAACATGCTACATCAGCAAACACAATTATCAGAAATCAAACTGGACCTACAGCCGTGAGGAAGAGCATGGAGAGAGAGGGCTAGAATGCAGTGTCTGGTAATTAAAAAACATTTTATAAGCCTAAACGGTCTTCGCTCTCTTCCTCTCCATCGACAAGCTGCTTAGCTGAGACAGAGCAGTTTGACTACAAACACATGAACTGCTGGTGTTTAACTCTGCACTGGAGAAAAACAGGATCAAAAGACAAGCTGAGGAAATTTCCAAGTGTTTTTTCCACAAAGACAAACATTTTCTGAAATTATTGTTTACAAAATTCCAAATGAATCAGAAAAACCACATAAGCTCTTTGGACATCATTATTTTGAAAATAAGTGCAAACCGAGCACCAGGGAGTTGTTACCTGCTGTAAATTCAATTCATGGAAATCGGTGTGGCAGGAACTGAGGAAATAATTCAATATGAAATTGAAGTTTATTTTCTAAATGTATGTTATAGATCTCATTGTGAACAATTAATCTATGCTTAATTTTTTTTGTTTTAGATTTCTTTTTAAAGTTTTTGACTTCTGTATTTAATCAAAATGTAGTAACTGGATCGCAAATACTGTGAAAACAACAGACTTCTCTCTGGTAACGAATGCCGGACTTTTCCAGTGATCTAGTCCGTTTAAACCCTGCCCAGTTCTTGTTCCTCCACCTTCATTTTTGAGTGCAGTGCCAACATCTCAAAATCCAATCAACAATGGATGGATAGAACAAAGACCCGCCCTACATTTTTTCTTTTCCGATAATCCATTAATCACAGCGGTACGTCACAATACAGAAAGAAAAGATCTGTCGCTACTTTTGTTTCACTTCGAATTTCAACCTGATGAAGTACACCTGTAAGTGTGATATGTGGCTTACATGACTCCTTGATAAAAAAAAAAAGTTTTAGCCTGATTAGTTTAATCATACAAATCAGCAAAAAGTCTTGCAATGTCTGCAACTCCACACACTTATTCCTCAGTTTGTAAAAGATCAGCATTATATTCAGTATTGACCATACAAATCACATCACTCACCCACCTGATCCACTGAATCTGGAATGAGTCCAGCACCACTCTGATTGTAATGGCTAAAGTATGAGCAATATGTAAATGAGATCCCCATTGCATCCATAAAGTAGTGATGCACATGCATAATTAATTGGCTTGTGTATATTTTATTACCTGTTTATTTTATGCTCATCTATCACCATAGTTGAGGGGTCTTGGTAAGTCTTGGTAAGTATAAGAGACTAAAAAGTATTTTATACCCTAAACTTTTGAATGGTATATTCTGAAAGTGATTAACAAACAGCTGTCCAGAGGAGTTTATTTGTTTGATTGTTTGTGTGTTTTGTGTAATTAGGAGGTCTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU148641 True 2438 lncRNA 0.37 1 7598433 7600870

Neighbor

gene id symbol gene type direction distance location
CI01000026_07177994_07186042 NA coding upstream 410884 7177994 ~ 7187549 (+)
CI01000026_07160036_07169929 GLCEB, GLCE coding upstream 428102 7159592 ~ 7170331 (+)
CI01000026_07143654_07144440 NA coding upstream 453799 7143292 ~ 7144634 (+)
CI01000026_07134607_07138396 NA coding upstream 459812 7134607 ~ 7138621 (+)
CI01000026_07070470_07091280 CORO2B, CORO2BA coding upstream 506924 7070470 ~ 7091509 (+)
CI01000026_07716356_07721570 TIPIN coding downstream 115486 7716356 ~ 7721605 (+)
CI01000026_07763144_07765276 FIBIN, FIBINB coding downstream 161838 7762708 ~ 7765336 (+)
CI01000026_07766716_07782894 BBOX1 coding downstream 165846 7766716 ~ 7782992 (+)
CI01000026_07872070_07873313 CLN6, CLN6A coding downstream 270705 7871575 ~ 7873357 (+)
CI01000026_07874837_07876094 CALL4, CALML4A, CALML4 coding downstream 273967 7874837 ~ 7876199 (+)
G130738 NA non-coding upstream 323 7597442 ~ 7598110 (+)
G130732 NA non-coding upstream 67461 7529674 ~ 7530972 (+)
G130716 NA non-coding upstream 123284 7474789 ~ 7475149 (+)
G130689 NA non-coding upstream 137552 7460463 ~ 7460881 (+)
G130686 NA non-coding upstream 194034 7404113 ~ 7404399 (+)
G130834 NA non-coding downstream 103634 7704504 ~ 7704913 (+)
G130840 NA non-coding downstream 106129 7706999 ~ 7710154 (+)
G130842 NA non-coding downstream 124439 7725309 ~ 7726667 (+)
G130864 NA non-coding downstream 149387 7750257 ~ 7750467 (+)
G130865 NA non-coding downstream 150697 7751567 ~ 7751773 (+)
G130552 NA other upstream 501781 7095053 ~ 7096652 (+)
G128757 NA other upstream 1271648 6326196 ~ 6326785 (+)
G128601 NA other upstream 1606672 5983879 ~ 5991761 (+)
G128585 NA other upstream 1648311 5949813 ~ 5950122 (+)
CI01000026_04556074_04556964 FOXB1B, FOXB1, FOXB1A other upstream 3042116 4555776 ~ 4557613 (+)
G130967 NA other downstream 587504 8188374 ~ 8189073 (+)
CI01000026_08297901_08307596 CTRB1 other downstream 697703 8297857 ~ 8307629 (+)
G131077 NA other downstream 900538 8501408 ~ 8506787 (+)
G132667 NA other downstream 1967869 9568739 ~ 9569160 (+)
G133192 NA other downstream 2558949 10159819 ~ 10161961 (+)

Expression


Co-expression Network