CI01000027_01651455_01676579 (SYNGAP1B)


Basic Information

Item Value
gene id CI01000027_01651455_01676579
gene name SYNGAP1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 1650811 ~ 1676579 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_01651455_01676579.mRNA
AGTTTCCTCAGTAGAAGACTAAAGGGGTCCATCAAACGGGCCAAGAGTCAGCCCAAACTGGACCGAACCAGCAGCTTCCGCCACATGATCCTCCCTCGTTTCCGCAGCGCTGACCAGGAACGGACTCGTCTGATGCAGAGCTTCAAAGAATCGCACTCCCATGAGTCTTTGCTGTCTCCCAGCAGCGCAGCCGAGGCCTTGGATTTGACACTTGATGAAGATGCGATCATCAAGCCAGTTCACTCCAGTATACTGGGACAGGAGTACTGTTTTGAGGTGACAACTGCTTCAGGAACAAAGTGTTTTGCCTGTCGGTCAGCTGCGGAGCGAGACAAATGGATAGAGAATCTACAGAGAGCTGTCAAACCAAACAAAGACAACAGTCGACGTGTCGACAATGTTCTGAAGCTGTGGATCATCGAGGCCCGTGAACTCCCACCCAAAAAGCGATATTATTGTGAACTGTGTTTGGATGACATGCTTTATGCCCGCACCACCAGCAAACCCCGAACCGATACTGTGTTCTGGGGTGAGCACTTTGAGTTCAACAACCTGCCAGCTGTCCGCAACCTCCGCCTTCATCTTTACAAAGAGACGGACAAAAAAAGACGCAAGGAGAAGAGCACATACCTGGGCTTGGTCAGCATCCCCATTTCCAGCATCACTGGTCGTCAGTTTGTGGAGCAATGGTACCCCGTCATTCAGCCCAGCGTCCTGGCCAAGGGTGGCGGTGTGGGAGGGGGCAAAATCATCAACGCTTCCCTGCGGCTCAAGTCGCGCTTTCAGACCATGAGCATCCTGCCAATGGAGCTGTATAAAGAGTTTGCCGAGTATGTCACCAACAACTACCGAACTCTGTGCGCGGTTCTGGAGCCACTGCTGAGTGTCAAGAGCAAAGAGGAAGTGGCCTGTGCTCTGGTGCACATCCTGCAGAGCACAGGGAAGGCAAAGGATTTCCTTTCAGACATGGCAATGTGCGAGGTGGACCGATTTATTGACCGAGAGCACCTTATCTTCAGAGAGAACACCCTGGCCACCAAAGCCATAGAAGAGTACCTCAAACTCATTGGACATAAGTACCTCAAAGACGTTTTAGGTGATTTTATCCGAGCGCTGTATGAGTCAGAAGAGAACTGTGAAGTCGACCCAATGAGAACTCCACCTTCTGTACTGCCCGAACATCAAGCCAACCTCCGGATGTGCTGTGAGCTTGCACTCTGCAAAATCGTCAACTCTCATTGTGCGTTTCCAAGAGAACTGAAAGAGGTCTTTGCGTCCTGGCGTGTTCGATGCGCTGAGAGAGGAAGAGAGGACATTGCAGATCGACTGATCAGTGGTTCCCTCTTCCTGCGCTTCCTGTGTCCAGCCGTCATGTCGCCATCCTTATTCAATCTCACACAGGAATACCCAGATGAACAGACTTCGCGCACACTTACCCTCATAGCCAAAGTTGTGCAGAACCTTGCAAACTTCTCAAAGTTTGGCAGTAAGGAGGAGTACATGTGCTTTATGAATGAGTTTTTAGAGATGGAGTGGGGCTCCATGCAGCAATTCCTCTACGAGATCTCCAATCTCGATACCGTGAGCAACGCAGTTGCATTTGAGGGCTACATCGATTTGGGAAGGGAGCTGTCGATCCTGCACAGTCTTCTGTGGGAAGTCATGGCACAACTAAGCAAGGATGCTATCATCAAACTTGGACCATTGCCGCGCCTTCTAAATGACATCAGCATGGCCCTCCGTAACCCGCACCTCCAGAGACAGCCCAGTCATCAGACAGACAGACAGCCTCCAGAGAGACAGACAGATAGGCTGCTCTCCAGGCCCAGCTTCAACAGGGGCATCTCATCTGAGTTCCAGAACCTCATGATGAGAGACCTCAACAGTTCAATCGAGATCACTCGCCTGCCCTCTCCAACCTCTGCCATGTCCAGTGGCGGAGCCCCTCCAACCCGGCCTGGAATGGGGGGTTTTGTGGATCGCGATCATCCTCACCGAGCCTCATCTAAAGAAGTTTTCTATGTTGCCCGTCCCCCATTGGCCCGCTCCAGTCCAGCGTACTGTACTAGCAGCTCTGATATTACTGATCCAGACCCAAAGGACTCAAGAATGAACAGCGTCTCTAACCTGCAGTCTATGGGGGACATGCTCAACTCTTCCCAGGCCTCGATTGCTGGCCTCGGCAGCTACGGTGGGCTCGCGGCCTTGGGAGGAGGCCTCGGAGGTCAGCTGCGTGCCGGAGGGCGTATGTCAGCCGGATCCGGTGGTTCCAGTATGTCCGGGGGTCTGAGGTTGAGCCAACTGAGCCAGATGGGAGCCACCACCGACTCGCTGTCCCAACAGCAACAGCAGCAAGCCGCCGCCCTCCGCTACCCCCTCTCCTTCCAGAACCCTCTGTTCCACCTCGCTGCTGATGGGCCTCAGCTTCACCACCAGCACAGTCGAGCCCAACCTCCTCCTCCTCTCCTGCTGGCCCCTGAGCCAGATGCCTCTCACCCAACATACATCCCGCAGTTCGCCCATGGTGGTTTCTCCCGAAGCGAAGACCTCTCCACCCTCAGACCCGGCCCTCATCTGGGTCAGCCGAGCATTATTCACTCCCACAGCTACAGTGACGACTACAGCCGCCATAACCAGAGTGACTACAGGGGGCGCCAGCTCTCGATGCACATGCAGGAGCAGCAGCAGATGGCAGGCATGGCATCGCAGACCGGCACATCTCATTCATCACTAGCCACGCCTCCTTCCACCGTTCAGCCTGTCCGTCAAACCTCCATGGCTCCTCCCACACAGCGCATGAAATCGCAACCCTCACATCAGCTTTCCGTGAGTTCTGCTGCCGCTCCTGCAGCAAAGACCAGGCCACAGAGCGGAAACCTGCTTCAGTCCCCGGAGTCTGGCTTTGGGGGCCGGCAGCAGGGTCCTCGGCAGCAACTGTCCGTCAAAGACAGCACCCCCCCTGGCCTGCCGCATCAGCAGAGCTCCACCAGGGAGAGCCAGGGATCCCAGGGCTCTCAGGGCGGAACGCCGCAGTCCACACAGCAATCGAAATCACATCAGGAACGGCAACAGGTCCAGCAACAGCATCTGCTGAAGCCTACCATGAGCAAACAGGGCTCTTCCCAATCTCCAACCACTCTCAACCCCTCGACCCCTGCCTCTGAGCGAACGGTCGCCTGGGTGTCCAACATGCCCCATCTTTCTGCTGACATAGAGAGTTCCCGCATCGACAGGGAAGAATTCAAGCTAAAGGAGTATTCCAAGAGCATGGACGAGTCACGTTTGGACAGGGTGCGTGAATACGAGGAGGAGATCAACTCTTTGAAGGAGCGTCTGATAATGTCACACCGTAAGCTGGAGGAGTACGAGAGGAGGCTGTTAACTCAGGAGCAGCAGACCAATAAAATCCTGCTGCAGTATCAGAGCCGACTGGAGGACAGCGAGAGGAGACTGAGACAGCAGCAGATGGAGAAAGACAACCAAATTAAAGGAATTATTGACAGGAATGAAGACATGGAGTGAAGACACTCAGATGGTGAAGGGAGACCTGGGTTCTTACTCCCAAAAGGCCATAAAAATATAAATCATCATCTTCCTTCCTTGAAGTGTGTTAGTGCAATGCCTTTCTGGAATGATCTCAGGACGAACAGGATGTGTTTGTAATTGAGGCAGTCATATGTTTGCAGTATTGATAATGTATTTGTCATTTTAAGCACTGCCGTCTGAGGAAACAAGTTTGACATGGACAGTGTCATGAATTGTGCTTAAGCTGAAAAGAAATTGCTTTATGAATTGCTAATGTTTAAAGAACTTGTTAAGAAAGAAAAAAGGCCATTTTTAAAAGCTCTTACAAGGATTCATCCATTAATAGAAATTTTGTGATTATTTAGTCACCCTCATGTGTTTGCAAACCTGTTTACTGTTAATATTTCAATGAAACACAAAAGGGGATTTTTTTAAATCTTTACACAGCTTTTTTACTTCTCAAGCTCCAATAAGGATAAAAACACCATAAAAGCACCGTCAACTTTTGTGTTCAATAGAAAAAAAGACAGTCATGCGGGTTTAAGAGTGAGATGAGGGTGTGTAAATGATGATGAAATTTTCATTCATTGGGGTGATTTGATACTTTAATGAGTGAAAATATGTGTAGCTGTAATAATAAA

Function

symbol description
syngap1b Predicted to enable GTPase activator activity. Acts upstream of or within brain morphogenesis and swimming behavior. Is expressed in hindbrain and optic tectum. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 5. Orthologous to human SYNGAP1 (synaptic Ras GTPase activating protein 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17631 SYNGAP, RASA5; Ras/Rap GTPase-activating protein SynGAP

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_01651455_01676579.mRNA True 4166 mRNA 0.51 16 1650811 1676579

Neighbor

gene id symbol gene type direction distance location
CI01000027_01610574_01630928 SMG5 coding downstream 19883 1610441 ~ 1630928 (-)
CI01000027_01587854_01598407 NA coding downstream 52365 1587738 ~ 1598446 (-)
CI01000027_01499088_01500312 RBM8A coding downstream 148783 1499040 ~ 1502028 (-)
CI01000027_01466387_01475758 OTUD7B coding downstream 175053 1465547 ~ 1475758 (-)
CI01000027_01420180_01439837 MTMR11 coding downstream 210974 1420122 ~ 1439837 (-)
CI01000027_01775507_01793407 PHF1 coding upstream 98916 1775495 ~ 1793407 (-)
CI01000027_01799404_01801967 NA coding upstream 122479 1799058 ~ 1802091 (-)
CI01000027_01832797_01839912 DNASE2 coding upstream 155917 1832496 ~ 1839912 (-)
CI01000027_01855521_01856799 NA coding upstream 178773 1855352 ~ 1856856 (-)
CI01000027_01966516_01972432 NA coding upstream 289665 1966244 ~ 1973211 (-)
G139553 NA non-coding downstream 41743 1608378 ~ 1609068 (-)
G139487 NA non-coding downstream 93641 1551085 ~ 1557170 (-)
G139498 NA non-coding downstream 187499 1462993 ~ 1463312 (-)
G139457 NA non-coding downstream 187986 1461180 ~ 1462825 (-)
G139514 NA non-coding downstream 317273 1333312 ~ 1333538 (-)
G139567 NA non-coding upstream 166797 1843376 ~ 1843598 (-)
G139568 NA non-coding upstream 167425 1844004 ~ 1844342 (-)
G139569 NA non-coding upstream 168658 1845237 ~ 1845494 (-)
G139486 NA non-coding upstream 188605 1865184 ~ 1870870 (-)
G139461 NA non-coding upstream 200127 1876706 ~ 1877374 (-)
CI01000027_01303308_01319462 NR2F5, NR2F1, NR2F1.L, NR2F2 other downstream 330650 1302034 ~ 1321178 (-)
CI01000027_01241417_01245177 NA other downstream 403834 1240478 ~ 1246267 (-)
G139117 NA other downstream 1413232 234212 ~ 237579 (-)
CI01000027_00131884_00132650 NA other downstream 1517009 131395 ~ 132650 (-)
CI01000027_00108990_00118237 NA other downstream 1532508 108119 ~ 118408 (-)
CI01000027_02119227_02124423 NA other upstream 445551 2119131 ~ 2125142 (-)
CI01000027_02226447_02227499 NA other upstream 550046 2225781 ~ 2227499 (-)
G140118 NA other upstream 1824955 3509352 ~ 3584679 (-)
CI01000027_03787377_03788902 NA other upstream 2110799 3787377 ~ 3790279 (-)
CI01000027_03922380_03931033 NA other upstream 2245817 3922242 ~ 3931033 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010220 NA non-coding NC_007127.7 CM002900.2 45455980 ~ 45691220 (+)