CI01000027_02156853_02161914 (RBM42)


Basic Information

Item Value
gene id CI01000027_02156853_02161914
gene name RBM42
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2156853 ~ 2162004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_02156853_02161914.mRNA
GTCCAGCAGAGTTTGGAGGCAAGAGCTGCCACTTTAGTTGGTCCACCACCTACATTTGTTGGTCCTGCTATGCCGGCAGTAGCGCCTCCTCCAATGATGCGTCCAGCATTTGTCCCGCACGTCTTACAGAGACCAGTGGGTCAGAGAATGCCAGTAATGCGTGGTCCACCTCCTCAGGGCATGATAGCACCTCCTCTTCCCAGACCTCCACCTCCTCCACCCATGATGATGGCTCCACCTATGCCAGGACCTCCTCAGCCCCAAATGGGTCCAATCGGACCACCCATGGGGCCCATGCCACCAGTTGGAGGCATGAACCCTATGCCTCCGGCACCACAGCGGCCTATGGCTCAAGGCCCTGCGAAGATCACTCCCAGTGTTATACAGGCGGCCCCCACTGTTTACACAGCACCCCCTGCCCCTAAGAGAACTGACTACAAGAGCCAGAAACAAGCACGCATGGAGGAGTTGTCAGCATTGGTGGCAGAGCAGCAGGCCGCAGTCATGGCAGCTGGGCTCCTGGAATCAAAGAAGGAGGCGGCCACCGATGACAGCAAGATCGGGCCGAGCATGCCAGAGCCCGAGCCTACACATCCTGCTGATACCAGCACAGAAGATAAGAAGAAAGGGAAACAGGAAAAGCAGAAGAAATGTATTCGGGTTGCAGCTGGTGTCACATGGGAGGACACCAGCCTATTAGAGTGGGAAACAGATGATTTCCGGATATTTTGTGGAGATCTGGGGAATGAGGTGAACGATGACATTCTGGCAAGAGCGTTTAGCCGTTATCCATCCTTTCTGAAGGCGAAGGTTGTTCGAGACAAACGCACTGGAAAAACAAAAGGTTACGGCTTCGTGAGTTTTAAAGATCCCAACGATTATGTGCGCGCCATGAGAGAAATGAACGGGAGGTATGTGGGCAGCAGACCCATCAAACTGAGGAAGAGTTCATGGAAAGATCGCAATCTGGAGGTTGTGCGTAAGAAACAGAAGGAGAAAAAGAAGTTGGGACTGAGATAATCCATCTGTACTGTAAATGTGGACTTGATTTGTGTGACCCAGGACATATATAACGAGTAGGAGTCATTCACACTCCTCCATTAGTTGCAA

Function

symbol description
rbm42 Predicted to enable RNA binding activity. Acts upstream of or within lens development in camera-type eye. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human RBM42 (RNA binding motif protein 42).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_02156853_02161914.mRNA True 1110 mRNA 0.52 8 2156853 2162004

Neighbor

gene id symbol gene type direction distance location
CI01000027_02125080_02146147 NA coding upstream 10351 2124834 ~ 2146502 (+)
CI01000027_02106256_02118045 NA coding upstream 38355 2106185 ~ 2118498 (+)
CI01000027_02083444_02085743 NA coding upstream 71073 2083143 ~ 2085780 (+)
CI01000027_02059709_02072254 GAPDHS, G3PT, GAPDH coding upstream 84448 2059377 ~ 2072405 (+)
CI01000027_02040721_02047487 NA coding upstream 109287 2040621 ~ 2047566 (+)
CI01000027_02194222_02218628 ARHGAP30, ARHGAP33 coding downstream 32218 2194222 ~ 2219765 (+)
CI01000027_02230213_02233471 NA coding downstream 68209 2230213 ~ 2233491 (+)
CI01000027_02234729_02237937 NA coding downstream 72725 2234729 ~ 2238114 (+)
CI01000027_02242334_02250969 DCAF13 coding downstream 80330 2242334 ~ 2251188 (+)
CI01000027_02254195_02308930 NA coding downstream 91899 2253903 ~ 2310086 (+)
G138656 NA non-coding upstream 1771 2154569 ~ 2155082 (+)
G138649 NA non-coding upstream 3112 2149329 ~ 2153741 (+)
G138693 NA non-coding upstream 37060 2119198 ~ 2119793 (+)
G138672 NA non-coding upstream 74801 2077080 ~ 2082052 (+)
G138686 NA non-coding upstream 103918 2052580 ~ 2052935 (+)
G138669 NA non-coding downstream 109365 2271369 ~ 2324059 (+)
G138675 NA non-coding downstream 164888 2326892 ~ 2329110 (+)
G138683 NA non-coding downstream 169985 2331989 ~ 2335650 (+)
G138651 NA non-coding downstream 179200 2341204 ~ 2345765 (+)
G138515 NA other upstream 479993 1664408 ~ 1676860 (+)
G138436 NA other upstream 649037 1506961 ~ 1507816 (+)
G138290 NA other upstream 1157672 995970 ~ 999181 (+)
G138247 NA other upstream 1287278 855388 ~ 893121 (+)
G138238 NA other upstream 1325170 829774 ~ 831683 (+)
G138915 NA other downstream 1322383 3484387 ~ 3486647 (+)
G138953 NA other downstream 1340068 3502072 ~ 3520065 (+)
G140436 NA other downstream 2575394 4737398 ~ 4774262 (+)
G140440 NA other downstream 2618413 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2886919 5050310 ~ 5055755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011001 rbm42 coding NC_007127.7 CM002900.2 44881829 ~ 44900306 (-)