CI01000027_02337884_02402668 (RIMS2)


Basic Information

Item Value
gene id CI01000027_02337884_02402668
gene name RIMS2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 2337884 ~ 2402668 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_02337884_02402668.mRNA
GATAGGAAAAGAAGCCCATCAGCAACCAGGGATCCAAACCAAAAATACGACCAAAGGGAGGAGAAGGCGGAGCGTTCGCAGTATGCCCCAGGGGAGGGCGGCATGCCACGATCACCGTCTGACTACGGGGCCGGAGACCGCCAATGGCGGGGAGGCTACGGCCGCTCCTACGAGGACGCAGAGGTAGCGCGAGGGGCGTACCGTGCTCGACGGGGCGGCTGGCACTCTCAGGAAGAGTACCCTCCCGAACCCGGCTTCCTGCCTGATGGCCCACCCCTCAGCGAGCATGAGCTACAGCGCCAGCGGCAGGAGGAGTACCAGAACCGCTACCGCAGCGACCCGAATCTGGCCCGATACCCGGTCAAACCACAACCTTACGAGGAGCAGATGCGCATGCACGCCGAGGTCTCGCGCTTCAGGCACGAACGGCGCCACAGCGACGTCTCCTTGGCGTACACAGAGATGGAGGAGCCCCTGGGGCCCTTGCGGGGTCCCCACTACTCACCAGGTCCCGGACACACCCACTGGAGGTCCAACCACAGTCCCCCAGGTGTGGACTCCCTCCACAGGCAGCAGCTTCTGGATCCTGCCTCGGCCGTGCGGAAGAGTAAACGAGAGAAGATGGAGAGCATGCTGCGGAATGACTCGCTCAGTTCCGACCAATCAGAGTCTGTCAGGCCACCGCCGCCCAAACCTCACAAGACCAAGAGGGGCGGCAAAATGAGGCAGGTGTCTCTGAGCAGCTCCGAGGAAGAATTGGCCACCACGCCTGAGTACACCAGCTGTGAGGACGTGGAGATTGAGAGTGAGTCTGTGAGCGAGAAAGGGGATTTGGATGGCCACTGGTGGGATCATACAACGTGGCATAGCAGCGATGCTTCCTCCATGTCTTTGCACCCGGTCACATGGCAGCCCTCCAAAGACGGAGATCGACTCATTGGCAGGATCCTGCTCAACAAGCGCATGAAGGACGGCAGCGTTCCTCGCGACTCTGGAGCTCTTCTGGGACTGAAAGTTGTTGGGGGAAAGATGACAGAGTCCGGGCGACTTTGTGCATTCATCACCAAAGTAAGGAAAGGAAGTTTAGCGGATACAGTTGGGCACCTCAGACCAGGTGATCAGGTCCTAGAGTGGAACGGCCGACATTTACAAGGAGCCACATTTAAAGAAGTTTACAATATCATTTTAGAATCAAAGCCAGAGCCTCAGGTGGAACTAGTGGTCTCTCGACCCATTGGAGATATCCCCAGGATACCAGAAAGCACACACGCACAACTGGAGTCCAGTTCAAGTTCGTTTGAGTCACAGAAGATGGAGCGTCCCTCCATATCAGTCACGTCTCCCATGAGCCCCGGAATGCTGCGGGATGCCCCTCAGTACTTATCGGGACAGCTTACAGTCAAACTTTGGTATGACAAAGTCGGCCATCAGCTTATCGTCACCATATTGGGTGCAAAGGACCTGCCTTCAAGGGAGGACGGCCGACCACGCAATCCTTATGTGAAGATCTACTTCCTCCCTGACAGAAGTGACAAAAGCAAAAGAAGAACAAAAACGGTAAAGAAATCACTAGAGCCCAAATGGAACCAGACCTTTATGTACTCTCCCGTCCACCGGCGGGAGTTCAGGGAACGCATGCTGGAGATCACGCTGTGGGACCAGGCCCGGGTGAGAGAGGAAGAGAGTGAGTTCTTGGGAGAGATCCTCATAGAACTGGAAACAGCACTGCTGGATGATGAACCGCACTGGTATAAGCTGCAAACGCATGACGTCTCATCGGTACCCCTGCCCAAGAGCTCCCCCTGCCTTCAGAGACGAGCACTGCACGGAGACAGTCCCACACGCAGACTGCAGAGGTCTCAGAGGATCAGTGACAGTGAGTTCTCAGACTATGACTGTGAAGATGGTGTTGGCGTCGTATCAGACTATAGAAATGGCAGGGACCTCCAGAGCTCCACTCTCTCTGTGCCTGAGCAGGTCTTATCGTCCAATCATTGCTCTCGGTCAGCCGACATCAACCGGGCGCGGTCACGGTCGCCCAGCATGCCCCCTTCTCAGAGGAATTACGGAGCACCAGACAGGCATGAGTATCACCACAGGTCCCGTTCAGCAGACCAGCGGGCCGCAATGGAGCGTCCCATGTACAGTCGCTCTCGCTCCACAGAGCGGCCGCCCGACGGCCCCCACATGAGATCTTCGATGCCCTCCCTGCCGTCAGGACACTCCGCGCCACCCTCCCCTGCCTTATCGAGGGCACATCCTCGTGGTGGATCAGTTCAGACCAGCCCCACTGGGACCCCTGTGAACAGCAGGAGAGGACGACAGCTACCACAACTGCCTCCGAAAGGGACGCTGGAAAGAAAAGATGGAGATGAAGAACTTGAGCCTTGTCCAGGTGCTATGGATGTTGAGGAACGAACGCGGCAGATGAAACTGAAGATGAACAAGTATAAACAGGGAACAGGCTCGGACTCCAGGCTGGAACAGGACTATAACAAGCGTTCAGGCAGGGATCCTCAGCGGGGAGAAAACCTCTCGGCCAAGTCTTCGGACAGTGATGTCAGCGACGTGTCCGCTGTGTCGAGAACCAGCAGTGCATCTCGATTCAGCAGCATGAGCTACATCTCTGTCCAATCAGAACGGCCGCGGGGCAGCCGAAAGATC

Function

symbol description
rims2 Predicted to enable transmembrane transporter binding activity. Predicted to be a structural constituent of presynaptic active zone. Involved in positive regulation of dendrite extension. Located in extracellular exosome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_02337884_02402668.mRNA True 2664 mRNA 0.57 17 2337884 2402668

Neighbor

gene id symbol gene type direction distance location
CI01000027_02254195_02308930 NA coding upstream 27798 2253903 ~ 2310086 (+)
CI01000027_02242334_02250969 DCAF13 coding upstream 86696 2242334 ~ 2251188 (+)
CI01000027_02234729_02237937 NA coding upstream 99770 2234729 ~ 2238114 (+)
CI01000027_02230213_02233471 NA coding upstream 104393 2230213 ~ 2233491 (+)
CI01000027_02194222_02218628 ARHGAP30, ARHGAP33 coding upstream 118119 2194222 ~ 2219765 (+)
CI01000027_02419674_02422700 NA coding downstream 16965 2419633 ~ 2423128 (+)
CI01000027_02429134_02451902 RIMS2A, RIMS2 coding downstream 26338 2427563 ~ 2452535 (+)
CI01000027_02455787_02458435 DCSTAMP coding downstream 52485 2455153 ~ 2459044 (+)
CI01000027_02492454_02508459 NA coding downstream 89409 2492077 ~ 2508602 (+)
CI01000027_02530086_02589227 NA coding downstream 126970 2529638 ~ 2589476 (+)
G138683 NA non-coding upstream 2234 2331989 ~ 2335650 (+)
G138675 NA non-coding upstream 8774 2326892 ~ 2329110 (+)
G138669 NA non-coding upstream 13825 2271369 ~ 2324059 (+)
G138656 NA non-coding upstream 182802 2154569 ~ 2155082 (+)
G138740 NA non-coding downstream 119838 2522506 ~ 2524556 (+)
G138671 NA non-coding downstream 191399 2594067 ~ 2603016 (+)
G138756 NA non-coding downstream 201968 2604636 ~ 2604853 (+)
G138515 NA other upstream 661024 1664408 ~ 1676860 (+)
G138436 NA other upstream 830068 1506961 ~ 1507816 (+)
G138290 NA other upstream 1338703 995970 ~ 999181 (+)
G138247 NA other upstream 1468309 855388 ~ 893121 (+)
G138238 NA other upstream 1506201 829774 ~ 831683 (+)
G138915 NA other downstream 1081719 3484387 ~ 3486647 (+)
G138953 NA other downstream 1099404 3502072 ~ 3520065 (+)
G140436 NA other downstream 2334730 4737398 ~ 4774262 (+)
G140440 NA other downstream 2377749 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 2646255 5050310 ~ 5055755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002641 NA coding CM030136.1 CM030136.1 24195721 ~ 24211357 (-)