CI01000027_05061061_05063086 (APOEB)


Basic Information

Item Value
gene id CI01000027_05061061_05063086
gene name APOEB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5059739 ~ 5063414 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05061061_05063086.mRNA
GTATAAATGTCTCAATAAAATAAAATCTATTTGCAGAAGGATTAACAGTAAATTGAACGTACAGAGGAGTATAAATAATAGTGGACGTCTGCATGCAGTGATCATACTGGGCCCTCTGCATACTAAAGCCATGTTTGTTTTCATCAGCTGCATGGGGTGAATCAGACAGAGCTGAGCCAGGAGAAAAGGACAAGCTGGGACAAGAGGCTAAAGATCACTGAATAGGTGGAATCAAATTGTGGGTGATAAGGCTTTTTTGCGTTGTCACAGAAAAAAAACAACGTAATTACCCAAGGCTTTTTGGCCGGAAAAAAAGATTAGCTTTACAAAAGAACACGATCTTGTTGAGTGGTGTTATGTTCAGAATAGAATTGCTGAAGCAAATATAGGGCTGTATTCATTATGTTAAATCTTTACAGGGAATACTAAAGAATGTCTTATCTTTAAAGATAAACACTAGGCCATTTAGACGTGGAAGGGCATTGTGATCAAACGGGCTGCAATCAGCAGTAGTTTGAAATTTGTGACATTATTACACATCACTACATAACTTACTAAACAAAATTACAAGGAAGGCACTAGATGTTATTATGAAACATTTGTTTTTACTTATTATATATAATATAAAATGCACTATTGTTGTTGTTACCACCATTGCCATTGCTTATGTGAATGCTAATCCGAAAGTGTGAAGTGAGCAATAGTATGGCCAATAGGTCTCTATAGACATGCTAATAGGCTCATCCATGTTGATAGGCCATTGCAGTAAAACGTTCGAGCAACAATGTTGGCGCCAGCAAAAAAAGTTTACCTTGAGGCTCAATTGTTTCTTTAATCACGAATTTGTCCCACAGGGACATTTACAGTTGTTTGACTTTGTAAACTGTCCGTTTAAGGACAACAACTTCGATTTTGATCCACGCAGCAATATCTACTAAAACTAAATAATTAAATAGCTAAAAAATAATAGCCTATAAATAAAAGGTTACACTTTATTTTACAGTGCCATAGTTACATTGTAATTACTTAAATAAGTACTGAGTACTATTAATTAACCTCATGTACTTATAGAGTTACAGTTAGGGTTTAGGATTAGTTAGCCTACTTGTAATTATGCATATTTTACTGGTATTAATATAGTAAGTACATGTAGTAACGTGTAACTACGGCACTGTAAAATAAAGTGTTACCGCCAACGATATGCTTTTTAAATATGTGGGTAGGATATTTAACAGAGTAGTCTATAATAAATTATATAGGCTAAGCTAAGGGACGCAAAGTTTTTGTAATAGTCAGAACATACATGAATTCCTGAACACAATATGAAAGGAGAAGTGCCCTTAAAAATTTCGAAAATAAACTATATTAATAGCGCATTTTATCCCCACCTGGTGCGAAAAGATGCGGACTTTGCACACTTGCTGCAGTCAGTGACGCGTGGGATGATGCGCGAGCCCCGAACAAAGGCGAAATCACGTGGCAGTGATTGTGAAGGCAGCGGGTGTACTTGTCTGTCCATCAAAATGAGGTCTCTTGTGGTTATCTTTGTTCTGGCAGTTTTTACTGGCTGCCATGCTCGTAGCCTGTTCCAGGCTGATGCCCCTCAACCCAGGTGGGAGGAGATGGTGGACCGCTTCTGGCAGTATGTGTCCGAACTCAGCACACATGCTGACGGTGTGATGCAGGACATCAAGGGCTCCCAGGTCAGCAGAGAGCTTGACACCCTAATTACTGACACCATGGCTGAGCTGAGCTCATACAGTGACAGTCTTCAAACCCAGCTGACACCATACGCCTCTGATGCTGCTGGTCAGCTGAGCAAAGATCTCCAGCTCCTGGCTAGCAAACTGGAAACTGACATGACCGACGCTAAGGAACGCTCCACTCAGTACCTGCAAGAGCTGAAGACCATGGTGGAGCAGAACGCAGATGATGTGAAGAGCCGTGTCAGCACCTACACACGCAAACTGAAGAAACGCCTGAACAAGGACACCGAGGAGATCCGCACCACCGTGGCAACCTACCTGGGTGAGCTGCAGTCTCGTGCTTCCCAAAATGCTGATGCCGCGAAGGACCGTTTAGAGCCATACCTCACCCAGGCCAAGGATGGTGCCAGCCAGAAATTGGGTGCCATTAGCGAGCTGATGACGTCCCAGGCACGGGAGGTGAGCGAGCAGTTGGAGGTCCAGGCTGGAGCTCTGAAGGAGAAGCTGGAACAGACCGCTGAGGAGCTGCGCACCTCCCTAGAGGGCCGCATGGATGAGCTGACCAGCCTCTTCGCCCCCTATTCCGAGAAGATCCGTGAGCAGCTGCAGATTGTCATGGATAAGATCAAGGAGGCCTCAGCAGCTCTTCCCACTCAAGCTTAAGAGCTCCACGCTTATCTAGTATTAACACCAAACATAAACAGGAAGGGAGGTTTTGTGTTACTGAAATGTGCTTTTTTCATTCTGTGAGAGGTTGATAAGTGGTTAACAACCAGACTCCATTGGACTAGCACTGTCCATTATTGGACAAAAGAATACCATGTACTCACCATGTTTACTTTCTCAGTATTAACCCACTGTCTGAGGATATAATTTCCATAATGTCTTTTGTTTGCATACAGTAGAGCAATTTTAAGATCAATCAAATTGTCATGGAAGTTATCTAAGAGATTTTTTTGTAGTTATTGGGGCCACAATGGCACCATTCAAA

Function

symbol description
apoeb Predicted to enable several functions, including heparan sulfate proteoglycan binding activity; heparin binding activity; and low-density lipoprotein particle receptor binding activity. Predicted to be involved in several processes, including cholesterol catabolic process; lipoprotein metabolic process; and triglyceride-rich lipoprotein particle clearance. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular matrix and extracellular space. Predicted to be part of high-density lipoprotein particle; low-density lipoprotein particle; and triglyceride-rich plasma lipoprotein particle. Is expressed in several structures, including digestive system; epidermis; fin bud; median fin; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease (multiple); artery disease (multiple); biliary tract cancer (multiple); eye disease (multiple); and familial hyperlipidemia (multiple). Orthologous to human APOE (apolipoprotein E).

GO:

id name namespace
GO:0034372 very-low-density lipoprotein particle remodeling biological_process

KEGG:

id description
K04524 APOE; apolipoprotein E

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05061061_05063086.mRNA True 2697 mRNA 0.42 5 5059739 5063414

Neighbor

gene id symbol gene type direction distance location
CI01000027_05050310_05055447 NA coding upstream 3984 5050310 ~ 5055755 (+)
CI01000027_05018992_05033275 NA coding upstream 25449 5018260 ~ 5034290 (+)
CI01000027_04978217_04987503 NA coding upstream 72236 4978217 ~ 4987503 (+)
CI01000027_04887494_04956477 KCNN3 coding upstream 102251 4887316 ~ 4957488 (+)
CI01000027_04860802_04872130 NA coding upstream 187173 4860802 ~ 4872566 (+)
CI01000027_05069310_05070638 NA coding downstream 4503 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA coding downstream 8279 5071693 ~ 5073136 (+)
CI01000027_05074328_05075547 NA coding downstream 10914 5074328 ~ 5075740 (+)
CI01000027_05082223_05082843 APOC2 coding downstream 18202 5081616 ~ 5083193 (+)
CI01000027_05157946_05159188 NA coding downstream 92719 5156133 ~ 5159246 (+)
G140674 NA non-coding upstream 20252 5039241 ~ 5039487 (+)
G140672 NA non-coding upstream 20941 5038545 ~ 5038798 (+)
G140437 NA non-coding upstream 68192 4975727 ~ 4991547 (+)
G140645 NA non-coding upstream 173921 4885619 ~ 4885818 (+)
G140683 NA non-coding downstream 38977 5102391 ~ 5108232 (+)
G140685 NA non-coding downstream 46405 5109819 ~ 5114502 (+)
G140684 NA non-coding downstream 55054 5118468 ~ 5164862 (+)
G140680 NA non-coding downstream 134212 5197626 ~ 5201086 (+)
G140734 NA non-coding downstream 139782 5203196 ~ 5203505 (+)
G140440 NA other upstream 274079 4780417 ~ 4785660 (+)
G140436 NA other upstream 280401 4737398 ~ 4774262 (+)
G138953 NA other upstream 1539674 3502072 ~ 3520065 (+)
G138915 NA other upstream 1573092 3484387 ~ 3486647 (+)
G140862 NA other downstream 649198 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 693568 5756982 ~ 5758881 (+)
G140924 NA other downstream 899792 5963206 ~ 5965326 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location