CI01000027_05082223_05082843 (APOC2)


Basic Information

Item Value
gene id CI01000027_05082223_05082843
gene name APOC2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 5081616 ~ 5083193 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_05082223_05082843.mRNA
GTATTAAAGGGCATTATAAAAATGTTCAGATAATAGGACAGATGCTTGATGATTTATGATGCTTGACTGTTTAGAACCTATGAATCCATAAACCTGCTGAATTTCTAAAATGCACATGACATAAGTCTTTATAGAGGACTGTACGAGGATTATTACAGCATTTAGTGTGAAAAACGCTAATGCAATGTTATTGCAAATGTAACAATATGTAGATAAAATACATATGCATTTCAACATGCGAGTACAACATGACTTTGCATTTTTATGATGTCTGTCTAATTTCATTATCTTTAGGTTAAGCAAATGCTTTCTTAAAACAAACAAACACAAACAAACAAACAAACAAAAAAAAACTAAAGTAAAAGTAAAATAATACAACTAAAATTAAATAATTGTTTTATACTACTAAAACTGCCTTGCCATGTTCAGCAACACAAGACATAATAATCTAACAGCATATTATATGCTTTTAATAGCTTATTTATGACTTAATTGAGTTTGTCACAAGGGATAAAATACTGCCATCTTGTGGTCAAATTTATATTTTCATTCTGTGCTGTGTTTCATGACCAGTGCTGCACTGAATCTCTCAGACATACCTGCCATTATGAACAAGCTACTGGCGATCACAGTGCTCGTTGCTTTCCTTGCTCTGGGAGCAGAGAGCTTTCGTGTGCCCAGGCAGGCAGAGGAGGAGAAGGGAACCATTGCCACTGTGGTGGACACCCTGAAGTCCTACTATGACAAGAGTGTTGACGCTGCCAGCGGCTATGTAGAGACCCTGAAGGGCTACAAACTGGAAGAGAAAGCCAAAAGCCTGTATGACGAGACAGTTCGTGCCGTCAGCACCTACGCCGGCATCTTCAACGACCAGGTGTACCACATTTTGTACCCTCAAGACAGCTCTTAAGTTACATAGTATCACACCTCAACACAGCTCCGTCTGTTTCTGGTCCTGAGTCTGTCACTACGCTGGAATCACAATTGCATGCATCCCACAAGAAGACGGCACAGTCTGGGGTGAAAACATGACTTTTGAACTCCCAATGGCCAGTTACCTCTGCCCTGTCAACTATACTGCAAAAGCACAAAGCACCCTGACACACATCAGTGGAAAAGTATGTGAATTTCTGGGGTAAAATCAGGTATAATGCTCGACCACAAGCTGTTTTTGGATGAAGATCAGAGACTCTACGCTACTGACTGTTACCTGGTGCCCTCTAACATTCATAAACATTGTAGTTTATCTGTATAGATTAA

Function

symbol description
apoc2 Predicted to enable enzyme activator activity. Acts upstream of or within definitive hemopoiesis and lipoprotein catabolic process. Predicted to be located in extracellular region. Predicted to be part of several cellular components, including chylomicron; low-density lipoprotein particle; and very-low-density lipoprotein particle. Is expressed in intestine; liver; pancreas; and yolk. Used to study familial hyperlipidemia; familial lipoprotein lipase deficiency; and hyperlipoproteinemia type IV. Human ortholog(s) of this gene implicated in familial apolipoprotein C-II deficiency; familial hyperlipidemia; and multiple sclerosis. Orthologous to human APOC2 (apolipoprotein C2).

NR:

description
apolipoprotein C-II

GO:

id name namespace
GO:0042627 chylomicron cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_05082223_05082843.mRNA True 1260 mRNA 0.39 3 5081616 5083193

Neighbor

gene id symbol gene type direction distance location
CI01000027_05074328_05075547 NA coding upstream 5876 5074328 ~ 5075740 (+)
CI01000027_05071693_05072917 NA coding upstream 8504 5071693 ~ 5073136 (+)
CI01000027_05069310_05070638 NA coding upstream 10964 5067917 ~ 5070868 (+)
CI01000027_05061061_05063086 APOEB coding upstream 18202 5059739 ~ 5063414 (+)
CI01000027_05050310_05055447 NA coding upstream 25861 5050310 ~ 5055755 (+)
CI01000027_05157946_05159188 NA coding downstream 72940 5156133 ~ 5159246 (+)
CI01000027_05205628_05209568 NA coding downstream 121894 5205087 ~ 5210170 (+)
CI01000027_05272101_05283619 NA coding downstream 187138 5270331 ~ 5283941 (+)
CI01000027_05398796_05408689 NA coding downstream 315215 5398408 ~ 5410067 (+)
CI01000027_05444238_05445884 NA coding downstream 360690 5443883 ~ 5446211 (+)
G140674 NA non-coding upstream 42129 5039241 ~ 5039487 (+)
G140672 NA non-coding upstream 42818 5038545 ~ 5038798 (+)
G140437 NA non-coding upstream 90069 4975727 ~ 4991547 (+)
CI01000027_04978217_04987503 NA non-coding upstream 94693 4978217 ~ 4987503 (+)
G140645 NA non-coding upstream 195798 4885619 ~ 4885818 (+)
G140683 NA non-coding downstream 19198 5102391 ~ 5108232 (+)
G140685 NA non-coding downstream 26626 5109819 ~ 5114502 (+)
G140684 NA non-coding downstream 35275 5118468 ~ 5164862 (+)
G140680 NA non-coding downstream 114433 5197626 ~ 5201086 (+)
G140734 NA non-coding downstream 120003 5203196 ~ 5203505 (+)
G140440 NA other upstream 295956 4780417 ~ 4785660 (+)
G140436 NA other upstream 302278 4737398 ~ 4774262 (+)
G140862 NA other downstream 629419 5712612 ~ 5712702 (+)
CI01000027_05757143_05758496 NA other downstream 673789 5756982 ~ 5758881 (+)
G140924 NA other downstream 880013 5963206 ~ 5965326 (+)
G141052 NA other downstream 1188174 6271367 ~ 6271600 (+)
CI01000027_06706050_06708485 NA other downstream 1623184 6705983 ~ 6708513 (+)

Expression


Co-expression Network