G138207


Basic Information

Item Value
gene id G138207
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 673651 ~ 718459 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157002
CATTGTAACTGCATGGAAGAGGTAGGTTTCTTTTGACTTCCTGATAATCTTATTTAATCTTTATTGTAATTATTGCTTTTATATCTCTATTTTCACTCCAATTCATGTGTATAATGTAATTTTACTTACCTGTGTGATTATTTTTGTCATTTTACCCTATTTGAGTTATATTTTGTCTTTTGCCTTAATATGTGGAATTTAGAGCACATGGTGATCAGTGTACATATTTATTTTATGGAGAACAAGGACAATTCATTCTAAAGAAACTGCTTGTTTGTGTTTTGTATCAGGACTAAAAGATCCAGCGAAACTGATGTCTACTGTTCCGTGTCTAACAACTTCACAAAGCTACACAATGCAGAATGTAAGTGTTTTATAACTGATGTCTGAGGCTGCACATCATGCTTGGCATCGCAAGCCACCAGTTACAAAAGAATTAGGACACAAATCTATGACAATGCCAAAACAAGTCCAATTTATTGCCAAATTCTGTGCATGACCTGGGAAGCTTTATTATGCATTTCTAAGAGACCCATATTGTGTGATCACAGACAGTGCTTGGCATTTCACAACCGGCAGACCCTTTCTGCCTATATAATAGCTTAATATATATAATAGATCAAGATGGCGCTGCGAATGGCAGCCTCGATATGGATCTCTCCAATTCTTTTTTTAGTCATTCTTTTCCTATGAGTTTCACCAGAGATGAACTACTGGACATAAGGCAAGACACACCAGACAACATGTTTTACTGCAGGTTTTTTTTTTTTTTTTTTGCATCACAGCTAAATGAATGGGTAGCATTTCAGCTGGAGTCCATTTACAACTAAAGCTCTGTGAAATGTCGTGTCGAAACAGAAGAGTGTAAGTGGCGTGCCAAGATTTTTTGAGCGGTTATTAACATGTTGCACCCCACATATGCATTAGAATATTGGTTGCTGATGTATTCTGGGTGGTTGCTAGGTTATTTCTTATTGACCCAAGTCACAGGTGTGTGTTTATCAGCATTTTACATCATCTTCAAACATGGCTATTCATAATTTAGAATTAAGAATTATCTGAAACTGTTCTGTTTAATATAGGTTTTAATTTACATGGTTTTAAATGCACAGTGAACACTGCAGTGCACTGAACCCAGAACTGAGTGACCACGAGCAAAGATGGCTGCATGCAGATCACATACTAGTTAGCTAGTTAGCATTACCTGGTAGTACATAGTTAGCAAAATCGGTTCGAAAAAAGCTAGCAAAATCATTGAAAAATAATAAGTCTTCATAATTGATGAAAATAAAATTGAAATAAAAAAAATATATTACTAATAGTTAGTAATATACAGTAAAATACTACTTATAAAACGGA
>TU157003
CATTGTAACTGCATGGAAGAGGTAGGTTTCTTTTGACTTCCTGATAATCTTATTTAATCTTTATTGTAATTATTGCTTTTATATCTCTATTTTCACTCCAATTCATGTGTATAATGTAATTTTACTTACCTGTGTGATTATTTTTGTCATTTTACCCTATTTGAGTTATATTTTGTCTTTTGCCTTAATATGTGGAATTTAGAGCACATGGTGATCAGTGTACATATTTATTTTATGGAGAACAAGGACAATTCATTCTAAAGAAACTGCTTGTTTGTGTTTTGTATCAGGTATGTTTTCTCTGTTGTACTATTTCCTTGTTTACTGTGATTTCTCTTTACTCTGGTTCATGCTCCTTTTTGTATTGTAATCTTATGGGAGAGAGAACAAGGGCAATTCTCTCTAAAGAGTCTGCTTGTTTGTGTTTTGTATAAGGACTAAAAGATCCAGCGAAACTGATGTCTACTGTTCCGTGTCTAACAACTTCACAAAGCTACACAATGCAGAATGTAAGTGTTTTATAACTGATGTCTGAGGCTGCACATCATGCTTGGCATCGCAAGCCACCAGTTACAAAAGAATTAGGACACAAATCTATGACAATGCCAAAACAAGTCCAATTTATTGCCAAATTCTGTGCATGACCTGGGAAGCTTTATTATGCATTTCTAAGAGACCCATATTGTGTGATCACAGACAGTGCTTGGCATTTCACAACCGGCAGACCCTTTCTGCCTATATAATAGCTTAATATATATAATAGATCAAGATGGCGCTGCGAATGGCAGCCTCGATATGGATCTCTCCAATTCTTTTTTTAGTCATTCTTTTCCTATGAGTTTCACCAGAGATGAACTACTGGACATAAGGCAAGACACACCAGACAACATGTTTTACTGCAGGTTTTTTTTTTTTTTTTTTGCATCACAGCTAAATGAATGGGTAGCATTTCAGCTGGAGTCCATTTACAACTAAAGCTCTGTGAAATGTCGTGTCGAAACAGAAGAGTGTAAGTGGCGTGCCAAGATTTTTTGAGCGGTTATTAACATGTTGCACCCCACATATGCATTAGAATATTGGTTGCTGATGTATTCTGGGTGGTTGCTAGGTTATTTCTTATTGACCCAAGTCACAGGTGTGTGTTTATCAGCATTTTACATCATCTTCAAACATGGCTATTCATAATTTAGAATTAAGAATTATCTGAAACTGTTCTGTTTAATATAGGTTTTAATTTACATGGTTTTAAATGCACAGTGAACACTGCAGTGCACTGAACCCAGAACTGAGTGACCACGAGCAAAGATGGCTGCATGCAGATCACATACTAGTTAGCTAGTTAGCATTACCTGGTAGTACATAGTTAGCAAAATCGGTTCGAAAAAAGCTAGCAAAATCATTGAAAAATAATAAGTCTTCATAATTGATGAAAATAAAATTGAAATAAAAAAAATATATTACTAATAGTTAGTAATATACAGTAAAATACTACTTATAAAACGGA
>TU157004
CATTGTAACTGCATGGAAGAGAGCACATGGTGATCAGTGTACATATTTATTTTATGGAGAACAAGGACAATTCATTCTAAAGAAACTGCTTGTTTGTGTTTTGTATCAGGACTAAAAGATCCAGCGAAACTGATGTCTACTGTTCCGTGTCTAACAACTTCACAAAGCTACACAATGCAGAATGTAAGTGTTTTATAACTGATGTCTGAGGCTGCACATCATGCTTGGCATCGCAAGCCACCAGTTACAAAAGAATTAGGACACAAATCTATGACAATGCCAAAACAAGTCCAATTTATTGCCAAATTCTGTGCATGACCTGGGAAGCTTTATTATGCATTTCTAAGAGACCCATATTGTGTGATCACAGACAGTGCTTGGCATTTCACAACCGGCAGACCCTTTCTGCCTATATAATAGCTTAATATATATAATAGATCAAGATGGCGCTGCGAATGGCAGCCTCGATATGGATCTCTCCAATTCTTTTTTTAGTCATTCTTTTCCTATGAGTTTCACCAGAGATGAACTACTGGACATAAGGCAAGACACACCAGACAACATGTTTTACTGCAGGTTTTTTTTTTTTTTTTTTGCATCACAGCTAAATGAATGGGTAGCATTTCAGCTGGAGTCCATTTACAACTAAAGCTCTGTGAAATGTCGTGTCGAAACAGAAGAGTGTAAGTGGCGTGCCAAGATTTTTTGAGCGGTTATTAACATGTTGCACCCCACATATGCATTAGAATATTGGTTGCTGATGTATTCTGGGTGGTTGCTAGGTTATTTCTTATTGACCCAAGTCACAGGTGTGTGTTTATCAGCATTTTACATCATCTTCAAACATGGCTATTCATAATTTAGAATTAAGAATTATCTGAAACTGTTCTGTTTAATATAGGTTTTAATTTACATGGTTTTAAATGCACAGTGAACACTGCAGTGCACTGAACCCAGAACTGAGTGACCACGAGCAAAGATGGCTGCATGCAGATCACATACTAGTTAGCTAGTTAGCATTACCTGGTAGTACATAGTTAGCAAAATCGGTTCGAAAAAAGCTAGCAAAATCATTGAAAAATAATAAGTCTTCATAATTGATGAAAATAAAATTGAAATAAAAAAAATATATTACTAATAGTTAGTAATATACAGTAAAATACTACTTATAAAACGGA
>TU157005
CATTGTAACTGCATGGAAGAGAGCACATGGTGATCAGTGTACATATTTATTTTATGGAGAACAAGGACAATTCATTCTAAAGAAACTGCTTGTTTGTGTTTTGTATCAGGACTAAAAGATCCAGCGAAACTGATGTCTACTGTTCCGTGTCTAACAACTTCACAAAGCTACACAATGCAGAATGTAAGTGTTTTATAACTGATGTCTGAGGCTGCACATCATGCTTGGCATCGCAAGCCACCAGTTACAAAAGAATTAGGACACAAATCTATGACAATGCCAAAACAAGTCCAATTTATTGCCAAATTCTGTGCATGACCTGGGAAGCTTTATTATGCATTTCTAAGAGACCCATATTGTGTGATCACAGACAGTGCTTGGCATTTCACAACCGGCAGACCCTTTCTGCCTATATAATAGCTTAATATATATAATAGATCAAGATGGCGCTGCGAATGGCAGCCTCGATATGGATCTCTCCAATTCTTTTTTTAGTCATTCTTTTCCTATGAGTTTCACCAGAGATGAACTACTGGACATAAGGCAAGACACACCAGACAACATGTTTTACTGCAGGTTTTTTTTTTTTTTTTTTGCATCACAGCTAAATGAATGGGTAGCATTTCAGCTGGAGTCCATTTACAACTAAAGCTCTGTGAAATGTCGTGTCGAAACAGAAGAGTGTAAGTGGCGTGCCAAGATTTTTTGAGCGGTTATTAACATGTTGCACCCCACATATGCATTAGAATATTGGTTGCTGATGTATTCTGGGTGGTTGCTAGGTTATTTCTTATTGACCCAAGTCACAGGTGTGTGTTTATCAGCATTTTACATCATCTTCAAACATGGCTATTCATAATTTAGAATTAAGAATTATCTGAAACTGTTCTGTTTAATATAGGTTTTAATTTACATGGTTTTAAATGCACAGTGAACACTGCAGTGCACTGAACCCAGAACTGAGTGACCACGAGCAAAGATGGCTGCATGCAGATCACATACTAGTTANNNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157002 False 1359 lncRNA 0.35 3 673651 718459
TU157003 False 1504 lncRNA 0.35 2 673651 718459
TU157004 False 1178 lncRNA 0.36 4 673651 718459
TU157005 True 1013 lncRNA 0.38 3 673651 674989

Neighbor

gene id symbol gene type direction distance location
CI01000027_00637372_00642483 CTHRC1B, CTHRC1, CTHRC1A coding upstream 31009 637372 ~ 642642 (+)
CI01000027_00527282_00534071 NA coding upstream 138596 526867 ~ 535055 (+)
CI01000027_00505199_00523652 NA coding upstream 149999 504270 ~ 523652 (+)
CI01000027_00391159_00499309 CSMD3 coding upstream 173891 390683 ~ 499760 (+)
CI01000027_00365674_00371897 CSMD3 coding upstream 301655 364990 ~ 371996 (+)
CI01000027_00738809_00739296 NA coding downstream 19545 738004 ~ 740394 (+)
CI01000027_00765527_00776450 MIOS coding downstream 47008 765467 ~ 776763 (+)
CI01000027_00779517_00795032 NA coding downstream 60495 778954 ~ 795389 (+)
CI01000027_00909268_00918831 NA coding downstream 190054 908513 ~ 919213 (+)
CI01000027_00949578_00953698 NA coding downstream 230262 948721 ~ 954281 (+)
G138155 NA non-coding upstream 28200 643621 ~ 645451 (+)
G138115 NA non-coding upstream 426069 245883 ~ 247582 (+)
G138114 NA non-coding upstream 428343 244016 ~ 245308 (+)
CI01000027_00238851_00240657 NA non-coding upstream 432866 238851 ~ 240991 (+)
G138107 NA non-coding upstream 455021 218387 ~ 218630 (+)
G138229 NA non-coding downstream 91198 809657 ~ 809941 (+)
G138233 NA non-coding downstream 96122 814581 ~ 814806 (+)
G138234 NA non-coding downstream 97535 815994 ~ 821269 (+)
G138247 NA non-coding downstream 140883 855388 ~ 893121 (+)
G138267 NA non-coding downstream 215284 933743 ~ 934498 (+)
G138030 NA other upstream 573394 39146 ~ 100257 (+)
G138238 NA other downstream 111315 829774 ~ 831683 (+)
G138290 NA other downstream 277511 995970 ~ 999181 (+)
G138436 NA other downstream 788502 1506961 ~ 1507816 (+)
G138515 NA other downstream 945949 1664408 ~ 1676860 (+)

Expression


Co-expression Network