G138114


Basic Information

Item Value
gene id G138114
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 244016 ~ 245308 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU156898
AGTTGTTTAAACAAAAGAAAATTAATACATTTTAATAGATGCATTTAATTAAATATAAATTATCATTTAATTTACTTTAATATTAACTCCATTAAAACAACTGTGTTTTGATTTTGTTCTATTTATTTCCTTATTCTGTGATGTTTGTGGTCATGCTGCTCAATATGTAATATGAAATACTTCATTACAGAAGTAAAATGGGTCTCGTATGATGTTGGCTTTAAATTTAAAAGAATCGGGCTTTTTGTATTGAAATATAAAGCATTTTTCTTTCTTCTTGACCGCTGCATTGACAGAGAGTGGCGAAGAACTGCAAGAAACAAACACTACTAACACAATTAACATCAGTGAGGAGCGGAGCCGTTTAAAACAGCATGCTTATTCGTTTAATCAGCCATTAATTGCTTTGAATCGAATGAGTGATGATTCAAACACTATGTTTGGAGCAACAGGAAATTGGATGCTGCTGTTTCCTGTTCTTTTATGCGTTACAACTGCTCAGGCAATTAGTGACATTCGCATTCCCTCACGCATCTCCGCCGTATCGAGCGTTTCACCGTGCTTCTGTTTGCGGCGTTGGCTTTGTGGTGTTTTGTCGCGGCGGGCGCCGACTGTATTGCCCAACCAAGCACAGCTCAATTCATTGGAGGAAGCAGGTGTGTGACTTCCCTCCTGAATGATTTAGGGGAACGGGCTCTTTCACAATTCTTCCAGCACGACACCTCGACTTGAAATGATCAGATTGGCAGCGCTCGGCTCAGAGAATATCAACTTTACCTCCTTTTTTCCATTCTGACCTTAAAGCCCGCTACAAACCCTCAAAGAGGCAACAATAAGCTTTGGAAAACAACATATAGAGCCTCTAGCTCATGTGGAAATGAGGTGCCATGGACGCCCACCATATGTCTGACCACCATCTGTGTGGAGTTTTTAAAGCGAGATGAAGGTTGTAACTTTGTTTACAGGGAGTCCATCCATAATTAATTCAACACGCCACTGTGAAATGCGTCATATATCTTTACAGCTGGGTTGTGGTGAGCTCTGTCCGGTCATTTGGGCTTGACATGTTACTCGCACCCAGAGAATTGTGTGTAATATCGCCTCCAGCACACTGTTTTATGAATGTTGTGGTAAATGATGGCAGATTTGTTCCATGTGGCTTCAGGCTACAGGAGGGTAGCGATGGGAATCGTAAGGAATTTAATGATTCCGATTTCGCTTAATGATTTCGGTGGCTTTGCGATTCCTTTAATGGCTCCTAGTGCAAGAAATAATTGATCTAAACTATAAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU156898 True 1293 lncRNA 0.40 1 244016 245308

Neighbor

gene id symbol gene type direction distance location
CI01000027_00238851_00240657 NA coding upstream 3025 238851 ~ 240991 (+)
CI01000027_00229612_00237058 RAD21A, RAD21B, RAD21 coding upstream 6257 229005 ~ 237759 (+)
CI01000027_00122108_00124986 NA coding upstream 119030 122024 ~ 124986 (+)
CI01000027_00089337_00092919 NA coding upstream 150931 88779 ~ 93085 (+)
CI01000027_00000579_00037786 NA coding upstream 206164 579 ~ 37852 (+)
CI01000027_00250077_00273130 EIF3H coding downstream 4448 249756 ~ 273130 (+)
CI01000027_00365674_00371897 CSMD3 coding downstream 119682 364990 ~ 371996 (+)
CI01000027_00391159_00499309 CSMD3 coding downstream 145375 390683 ~ 499760 (+)
CI01000027_00505199_00523652 NA coding downstream 258962 504270 ~ 523652 (+)
CI01000027_00527282_00534071 NA coding downstream 281559 526867 ~ 535055 (+)
G138107 NA non-coding upstream 25386 218387 ~ 218630 (+)
G138106 NA non-coding upstream 25672 218123 ~ 218344 (+)
G138104 NA non-coding upstream 27016 216288 ~ 217000 (+)
G138094 NA non-coding upstream 46302 196777 ~ 197714 (+)
G138115 NA non-coding downstream 575 245883 ~ 247582 (+)
G138155 NA non-coding downstream 398313 643621 ~ 645451 (+)
CI01000027_00681087_00701456 NA non-coding downstream 404881 681087 ~ 701956 (+)
G138207 NA non-coding downstream 428343 673651 ~ 718459 (+)
G138229 NA non-coding downstream 564349 809657 ~ 809941 (+)
G138030 NA other upstream 143759 39146 ~ 100257 (+)
G138238 NA other downstream 584466 829774 ~ 831683 (+)
G138247 NA other downstream 610080 855388 ~ 893121 (+)
G138290 NA other downstream 750662 995970 ~ 999181 (+)
G138436 NA other downstream 1261653 1506961 ~ 1507816 (+)

Expression


Co-expression Network