G138892


Basic Information

Item Value
gene id G138892
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3254930 ~ 3255207 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157815
TTCCTTCCGCCGGAAAAAATAGTCCCTGACCGTGAACAGCAACAGAAGTTACATTATTACGCCATTAGATGGCGGCAAAGACTGTCTTTATGAGTGTGTCAGTCAGTAGCGAAGACTTTTACATTGAAAAGACTGAATTGTTGTGAACACGGAACAAGACGCAACTGACAAATGCTTTGACTAGCGCTGTCAGTCACGGGAAAACCCCTTAACTGTTAAAAGGACAAGATAATACATCGAACATTTAAACATTTTTTTATTATGAACATAGGACTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157815 True 278 lncRNA 0.40 1 3254930 3255207

Neighbor

gene id symbol gene type direction distance location
CI01000027_03243374_03247133 TXNIP, TXNIPB coding upstream 7760 3243154 ~ 3247170 (+)
CI01000027_03233523_03240000 HFE2 coding upstream 14928 3233523 ~ 3240002 (+)
CI01000027_03212432_03231800 THBS3, THBS3A coding upstream 23068 3212432 ~ 3231862 (+)
CI01000027_03202787_03208051 MTX1A coding upstream 46629 3202787 ~ 3208301 (+)
CI01000027_03174793_03181990 NA coding upstream 72622 3174793 ~ 3182308 (+)
CI01000027_03278134_03279807 ANKRD34A coding downstream 22927 3278134 ~ 3281022 (+)
CI01000027_03335011_03357910 SLC4A7 coding downstream 79804 3335011 ~ 3358277 (+)
CI01000027_03421902_03436988 NA coding downstream 166621 3421828 ~ 3437216 (+)
CI01000027_03470743_03477848 TBX20 coding downstream 215413 3470620 ~ 3479641 (+)
CI01000027_03524553_03546701 SMARCC1, SMARCC1A coding downstream 268400 3523607 ~ 3546701 (+)
G138888 NA non-coding upstream 6224 3248478 ~ 3248706 (+)
G138859 NA non-coding upstream 62992 3191620 ~ 3191938 (+)
G138836 NA non-coding upstream 118063 3129459 ~ 3136867 (+)
G138835 NA non-coding upstream 126988 3127355 ~ 3127942 (+)
G138834 NA non-coding upstream 127655 3127043 ~ 3127275 (+)
G138884 NA non-coding downstream 54623 3309830 ~ 3314832 (+)
G138904 NA non-coding downstream 64076 3319283 ~ 3320531 (+)
G138925 NA non-coding downstream 162477 3417684 ~ 3417948 (+)
G138926 NA non-coding downstream 163216 3418423 ~ 3418690 (+)
G138934 NA non-coding downstream 178640 3433847 ~ 3434057 (+)
G138515 NA other upstream 1578070 1664408 ~ 1676860 (+)
G138436 NA other upstream 1747114 1506961 ~ 1507816 (+)
G138290 NA other upstream 2255749 995970 ~ 999181 (+)
G138247 NA other upstream 2385355 855388 ~ 893121 (+)
G138238 NA other upstream 2423247 829774 ~ 831683 (+)
G138915 NA other downstream 229180 3484387 ~ 3486647 (+)
G138953 NA other downstream 246865 3502072 ~ 3520065 (+)
G140436 NA other downstream 1482191 4737398 ~ 4774262 (+)
G140440 NA other downstream 1525210 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1793716 5050310 ~ 5055755 (+)

Expression


Co-expression Network