G138904


Basic Information

Item Value
gene id G138904
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3319283 ~ 3320531 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU157827
ACTACACTATTTTCCATGGAATCTGTTGTTCAGACTGTAAATCAGGAGAAAAATCGGGGCAAAAGTTGTGTAGTGTATTGCAGCCTTTAGTTGGCCGGAGTGAAAGTTTAATTGCATATGTGAGTGATTTACTCACATTGTAGAAGTTTGATCAGTCACAGGCGCAGGGTAATGTAAAGCTGTTTGCTAACCGCCACGACAGGAAAAAGAGCAGAAGAAGAAGAGACGATCTATGCACCAACCCAAAACAAGAGATCAGAGGCTGTATTCACAAATCATTTTATCTTACCACTAATAGTTCTCCTAAATAGTAGTAAAGTTCTCAGGAAAGAGTTTTCTCTTAAAACCTATTCACAAAGCTGCTGAGACCAACTTTTACTAAGGAATAAAGAGAAGTCTTAAGCTAAGAGAATGGGTGGGGTTGACCTCGTCCACTGTGATTGGCTGATGGGGGAGGGGTCTCTGTCAGTGATTTAATCATAGAAATTTTGTAGCACAAGATATCATGTTGCCATATTCCAAAAAAGGTTTTAAAATGTAGGCTAAGTATCACTAAAAAGTATATGTTCAGCTAATTGTCAGCCTCTTACATGTCTACATCTTAAGAGATTGCAGAAATCAAGTGGCAAATGATGTTTTATAAACAAAGTTCAGGAGGAGTACGTTCAAATTATCTATCCAATCAGCTCAAGAGGATCGAGGCATGTATTTATGTTTGTTGCCTGTACATAAATGAACCTTTATGTTATGTCTTTGCAGATTAAAATCTATATGTCAAAGTATTTTATTGCATTTTATAAGAGATATCACCCAAGGCTCAGCACCCAAGGCTCTATCGCCTGTTACCCCTAACTTTTCACAAATTTAGGAGCTGGTTTTAGTGTCAAAATGCTTCGTGAAATACTTTTCGAACAAAAATTTAGGAGTTCTAAAATTAGGACTGACACGCCCATTATTTTTAAGTTTCTCCTAAATCGGCAAGTTAGGAGCTACTTTAAGCCTTAAGATGTTTTATGAATACGGCCCCTGATGGCACGCAAGAGCTTGCTAGTTGCCTNNNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157827 True 1062 lncRNA 0.38 2 3319283 3320531

Neighbor

gene id symbol gene type direction distance location
CI01000027_03278134_03279807 ANKRD34A coding upstream 38261 3278134 ~ 3281022 (+)
CI01000027_03243374_03247133 TXNIP, TXNIPB coding upstream 72113 3243154 ~ 3247170 (+)
CI01000027_03233523_03240000 HFE2 coding upstream 79281 3233523 ~ 3240002 (+)
CI01000027_03212432_03231800 THBS3, THBS3A coding upstream 87421 3212432 ~ 3231862 (+)
CI01000027_03202787_03208051 MTX1A coding upstream 110982 3202787 ~ 3208301 (+)
CI01000027_03335011_03357910 SLC4A7 coding downstream 14480 3335011 ~ 3358277 (+)
CI01000027_03421902_03436988 NA coding downstream 101297 3421828 ~ 3437216 (+)
CI01000027_03470743_03477848 TBX20 coding downstream 150089 3470620 ~ 3479641 (+)
CI01000027_03524553_03546701 SMARCC1, SMARCC1A coding downstream 203076 3523607 ~ 3546701 (+)
CI01000027_03570192_03600805 CSPG5A coding downstream 249661 3570192 ~ 3600805 (+)
G138884 NA non-coding upstream 4451 3309830 ~ 3314832 (+)
G138892 NA non-coding upstream 64076 3254930 ~ 3255207 (+)
G138888 NA non-coding upstream 70577 3248478 ~ 3248706 (+)
G138859 NA non-coding upstream 127345 3191620 ~ 3191938 (+)
G138836 NA non-coding upstream 182416 3129459 ~ 3136867 (+)
G138925 NA non-coding downstream 97153 3417684 ~ 3417948 (+)
G138926 NA non-coding downstream 97892 3418423 ~ 3418690 (+)
G138934 NA non-coding downstream 113316 3433847 ~ 3434057 (+)
G138959 NA non-coding downstream 127448 3447979 ~ 3503193 (+)
G138915 NA non-coding downstream 163856 3484387 ~ 3486647 (+)
G138515 NA other upstream 1642423 1664408 ~ 1676860 (+)
G138436 NA other upstream 1811467 1506961 ~ 1507816 (+)
G138290 NA other upstream 2320102 995970 ~ 999181 (+)
G138247 NA other upstream 2449708 855388 ~ 893121 (+)
G138238 NA other upstream 2487600 829774 ~ 831683 (+)
G138953 NA other downstream 181541 3502072 ~ 3520065 (+)
G140436 NA other downstream 1416867 4737398 ~ 4774262 (+)
G140440 NA other downstream 1459886 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1728392 5050310 ~ 5055755 (+)

Expression


Co-expression Network