CI01000028_02308696_02319050 (MMP23BB)


Basic Information

Item Value
gene id CI01000028_02308696_02319050
gene name MMP23BB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2308403 ~ 2319050 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_02308696_02319050.mRNA
ATGCGCTGGGTCTGCTCCTGCGCGCTGTTGCTGATGGTGCTGGATAACGCTGTGACCGTGCCTGCGTGGACAAAACACACGGTGGCCAGTATTCAGCTGCATAAGCCATGTGTGCAGGTACCGGCACCTGCGGACACGAGGTCTCATCGAGGTCCGGCCCGATCCAAGCGCTATGCCATCAACCCACTGGGATACAAGTGGGAGCATTTCAACGTCACTTACAAGATCACGAAGTTCCCCAACACACTGAATAAAGATGATACCCGCAAAGCTATCAGCATCGCCTTCACGAAATGGAGCGATGTTTCTCCTCTGACTTTCACTGAAATCACCAACCCCAACAAAAGTGCTGACATCACTATAGGGTTCTACACGTACAATCACACCGATTGTTGGTGGTCTCCGTTGCACCCGTGTTTTGACGGACTGAACGGTGAGCTGGCCCACGCCTTCCTTCCTCCACGTGGAGAGATCCACTTTGACAACCATGAATTCTGGATTCTGGGAAAGTCCCGCTTCAGCTGGAAACAAGGTGTGTGGCTGAATGACCTGGTTCAGGTAGCTGCTCATGAAATCGGTCACGCTTTAGGCCTCTGGCATTCACAGGACCCTAATGCATTAATGCACCCCAATGCAACGTACACGGGATGCTTAGACAAGAAGCGTGTGTGTGATCCTTGGTCCCGGTTGGGTTTCTGTGAGAGGAGACGGAGCTTCATGAAGAAAAACTGCCCGCAGCGATGCGACCTGTGCTACGAGCCTCCGGATGCCGTATCTACCCCGACCCCTCCTCCTGAAAATGTGAAGATCAAAATTGTGCCTCGTGGAAAAGTTGTGGGCTTCCGCTGTGGGACAAAAAATACCAGAGTGCCTCCAAAAGTCAGCTGGTATAAGGATGGTGAGCAGTTGCTGACATCCATTCCTGGCTATATTGTAATTAAAGATCGGGACCTGCGGCTCGTGGCCAACGAATTCAATGAAGGCACGTACACCTGCCGCATCCATCGGCGCGGTAACGTGGTCTCTGCCAACTCCTGGGCCATCCGGCTGAAGCCAGAGCAGTCCTCCAACAACAGCTGATGGAGTGACTGAAGCTCGACATATTGACACTTGCTCTACCTCCAGGGCTCAAGACCACTCAGACCTGCTCTCCTCCGCTGCAGCGCACACATCGCTGTTTGGCGGTCAGAGTCGTAATGGACGACCTGCACAAGCAGTGGATCCTGACCTTCGTAACTCTGAGGTCCCGTATTGTCCAAGACAATATTTGGAAGGACCACCAAATGGATTTCCTGTTGTACTTCTGCTGCACAACGACAAAGGTGCTTGCTTTTTTTTTATTAACATAAATGCCACTTCTGAGGTATAATAAA

Function

symbol description
mmp23bb Predicted to enable metalloendopeptidase activity. Acts upstream of or within liver development. Predicted to be located in extracellular matrix. Predicted to be active in extracellular space. Is expressed in brain; liver; and notochord. Orthologous to human MMP23B (matrix metallopeptidase 23B).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K08001 MMP23; matrix metalloproteinase-23 (CA-MMP)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_02308696_02319050.mRNA True 1373 mRNA 0.52 8 2308403 2319050

Neighbor

gene id symbol gene type direction distance location
CI01000028_02190605_02195586 NA coding downstream 112439 2190568 ~ 2195964 (-)
CI01000028_02187324_02188153 NA coding downstream 120250 2186595 ~ 2188153 (-)
CI01000028_02036977_02046469 DAW1 coding downstream 261934 2036309 ~ 2046469 (-)
CI01000028_01770721_01773265 NA coding downstream 535059 1769608 ~ 1773344 (-)
CI01000028_01707320_01709779 NA coding downstream 597797 1706758 ~ 1710606 (-)
CI01000028_02327402_02338641 AP2M1, AP2M1.L, AP2M1A, AP2M1B coding upstream 8130 2327180 ~ 2338641 (-)
CI01000028_02349404_02380993 DVL3, DVL3.L coding upstream 29680 2348730 ~ 2381788 (-)
CI01000028_02389908_02398925 RNPEPL1 coding upstream 69675 2388725 ~ 2398925 (-)
CI01000028_02407653_02429674 ABCC5 coding upstream 88391 2407441 ~ 2429674 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 coding upstream 122333 2441332 ~ 2445596 (-)
G146312 NA non-coding downstream 13119 2295064 ~ 2295284 (-)
G146296 NA non-coding downstream 19649 2241968 ~ 2288754 (-)
G146300 NA non-coding downstream 49852 2257551 ~ 2258551 (-)
G146260 NA non-coding downstream 82049 2202365 ~ 2226354 (-)
G146261 NA non-coding downstream 82829 2225041 ~ 2225574 (-)
G146325 NA non-coding upstream 155475 2474525 ~ 2474788 (-)
G146340 NA non-coding upstream 245826 2564876 ~ 2565093 (-)
G146342 NA non-coding upstream 247678 2566728 ~ 2566973 (-)
G146460 NA non-coding upstream 456031 2775081 ~ 2775375 (-)
G146461 NA non-coding upstream 456552 2775602 ~ 2775836 (-)
G146238 NA other downstream 148365 2147378 ~ 2160038 (-)
G146190 NA other downstream 197138 2097570 ~ 2111265 (-)
CI01000028_00474810_00475211 NA other downstream 1833057 473609 ~ 475211 (-)
G144855 NA other downstream 2172527 135392 ~ 137202 (-)
G149329 NA other upstream 4380463 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 4651707 6965064 ~ 6984084 (-)
G149474 NA other upstream 4910741 7229791 ~ 7232783 (-)
CI01000028_07527725_07535631 ARPP19 other upstream 5206912 7525962 ~ 7535743 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013066 mmp23bb coding NC_007129.7 CM002902.2 45990394 ~ 46005179 (+)