G146296


Basic Information

Item Value
gene id G146296
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 2241968 ~ 2288754 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU166238
TCTGACTACGGTCAGACTTATAATATCCAAAAAACTGCCATACTGGCGAGCTGACTTTTCCTGTTTTATTTACAATTTCCTCGCTCGCTGCGGCACTCATTTTCTGCTTATCAGTCGCCGGTTACTGAAGAGGAATCCAGCAGACCAGCACGAGACAACGATATGGCGCAACCAAACATGATACTGTTACATGATTGGCTGTTAGCATGTCACTCCCTACGTTGCTAGGTTACCAGAGAGCGAGTGCCTTTGTTAATGCAACCAAACTTGCTTCGCAACCTCTGTTTTCTTCCGACGAAGAATAAAAAAATATTGAACGTTTTATCGAACACATTTTTTATTGATATCGATCACGTGTCTATCGCGATACATATCGTTATCGTTTTATCGCCCAGCCCTAATACAGATGTCAGGTGGTGGGTCGTCTTAGAAGAACAACAGCACTGCTTTTACAATGACATGCTAAGTGATAACAGAATAGAGGTTTTGACATAAAGAAGAGTGAAAAACAGTTGAACACAATACAACAACTAGGTCATTTTCAAGAAATGGTGCCATTTCTGAATCATTTATGTCTCTATGACATACTACGGATTAGGGCTGGGCGATATGGCAGAAAAAATTATCACGATAACATTTTTTCATATCAGTCGATATCAATAATTATCACGATTAATGTGAAATCTTTATTTCTTTCAAGATTAAAGGCAGATTTTTGCTCCTGAGTGAAAGATGTAGAAACCAGAGAGTTAAAGGGTTAGTTCACCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166238 True 771 lncRNA 0.39 2 2241968 2288754

Neighbor

gene id symbol gene type direction distance location
CI01000028_02190605_02195586 NA coding downstream 46004 2190568 ~ 2195964 (-)
CI01000028_02187324_02188153 NA coding downstream 53815 2186595 ~ 2188153 (-)
CI01000028_02036977_02046469 DAW1 coding downstream 195499 2036309 ~ 2046469 (-)
CI01000028_01770721_01773265 NA coding downstream 468624 1769608 ~ 1773344 (-)
CI01000028_01707320_01709779 NA coding downstream 531362 1706758 ~ 1710606 (-)
CI01000028_02308696_02319050 MMP23BB coding upstream 19649 2308403 ~ 2319050 (-)
CI01000028_02327402_02338641 AP2M1, AP2M1.L, AP2M1A, AP2M1B coding upstream 38426 2327180 ~ 2338641 (-)
CI01000028_02349404_02380993 DVL3, DVL3.L coding upstream 59976 2348730 ~ 2381788 (-)
CI01000028_02389908_02398925 RNPEPL1 coding upstream 99971 2388725 ~ 2398925 (-)
CI01000028_02407653_02429674 ABCC5 coding upstream 118687 2407441 ~ 2429674 (-)
G146260 NA non-coding downstream 15614 2202365 ~ 2226354 (-)
G146261 NA non-coding downstream 16394 2225041 ~ 2225574 (-)
G146271 NA non-coding downstream 20951 2219931 ~ 2221017 (-)
G146251 NA non-coding downstream 68048 2173651 ~ 2173920 (-)
G146247 NA non-coding downstream 80664 2160937 ~ 2161304 (-)
G146312 NA non-coding upstream 6310 2295064 ~ 2295284 (-)
G146325 NA non-coding upstream 185771 2474525 ~ 2474788 (-)
G146340 NA non-coding upstream 276122 2564876 ~ 2565093 (-)
G146342 NA non-coding upstream 277974 2566728 ~ 2566973 (-)
G146460 NA non-coding upstream 486327 2775081 ~ 2775375 (-)
G146238 NA other downstream 81930 2147378 ~ 2160038 (-)
G146190 NA other downstream 130703 2097570 ~ 2111265 (-)
CI01000028_00474810_00475211 NA other downstream 1766622 473609 ~ 475211 (-)
G144855 NA other downstream 2106092 135392 ~ 137202 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other upstream 152578 2441332 ~ 2445596 (-)
G149329 NA other upstream 4410759 6699513 ~ 6701240 (-)
CI01000028_06969947_06983352 NA other upstream 4682003 6965064 ~ 6984084 (-)
G149474 NA other upstream 4941037 7229791 ~ 7232783 (-)
CI01000028_07527725_07535631 ARPP19 other upstream 5237208 7525962 ~ 7535743 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G106684 NA non-coding NC_053121.1 CM020918.1 21107498 ~ 21108359 (+)