CI01000028_04729544_04888382 (CNTN5)


Basic Information

Item Value
gene id CI01000028_04729544_04888382
gene name CNTN5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 4729544 ~ 4888382 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_04729544_04888382.mRNA
TTTGCTAGAGCCGTTGCCGGGAGACCCGTGTCATATGCTGCAGTGCTGAGGATGAAAGCAGACAGTTCGTCATCCTCCTCGTTGAGCTCCAGGATGAGGTTAAGGAACAACTACGGAATGGGATCGCCTAGCCAAGACTGGCCTCCGTTCTCCAGACACAGATTCTCAGCCCTCAGCTCACAGGAGGACTACAGGAGTGAAGAGAGCGAGGAGTTTGGTCCAGTGTTCATTCAAGAGCCAGATGATGCAATCTTCTCCCTGGATACAGATGATAAGAAAGTGATAATGAATTGTGAAGCCAGAGGAAACCCTGTTCCGACCTACAGTTGGCTGATCAATGGAACGAATGTGGACGCAGAAGCAGATTTCCGCTACAGTTTGATTGATGGGAACTTAATAATAAACAATGCAAGTGAGGCCATCGATTATGGAAGATACCAGTGCAGAGCTGAAAACAGCATTGGCATCATCCTGAGTCGAGATGCCCTCCTGCAGTTTGCCTATCTCGGGGCGTTCAGCGGACGGACTAGAGGAGCCGTTTCGGTGAGGGAAGGCCAGGGGGTTGTGCTAATGTGTGCCCCCCCTCCTCATTCGCCAGCAGAGATCATCTACAGCTGGGTGTTCAATGAGCTCCCCTCGTTCGTGGCAGAGGACAGCCGGCGATTCATCTCGCAAGAAACGGGAAATCTGTATATCTCCAAGGTGCAGCCCTCGGACGTGGGCAGCTATGTGTGCCAAGTGAAGAACACTGTGACCAACGCCAGGGTCCTGAGCCCACCGACGCCCCTGACTCTCAAAACAGATGGTGTGATGGGGGAGTATGAGCCCAAAATTGAAGCGCATTTTCCTCAGACGGTGCTGGCAGCCAAAGGCGTCACAGTGAGGCTGGAATGCTTTGCCCTTGGGAACCCTGTCCCTACTATCACCTGGAGAAAGATGAGTGGGAACATCCCAAAAAAAGCCCGTCTGCGCAAATCACAGGCTGTTCTTGAGATCCCCAACATCCAGCTAGAGGATTCTGGGAGTTATGAGTGTAAAGCTGAGAACACCAGAGGAGGCACCGCCTTCAGAGGACATCTCCAGGTCTACACTCTGCCGCAGTGGATCAGCATGATAAATGACACTCAACTGGACAGCGGAGAGCAGCTCCATTGGGAGTGTCGAGCCACAGGAAAGCCCAGACCCACCAGAGTGGAAATGGTGAATGGGGAGCTTATCATTCACAGACTACAGCAGGCTGATTCTGGAATGTACCAGTGCATCGCCGAGAACAAGTATGGAGCCATCTACTCCAGCGCAGAGCTCAAAATACTGGCATCAGCCCCCGTGTTCAGCACCAGCCCTGTCCGGCTCATCGCGACCGTTGGGAAAGACGTGTCTCTGGAGTGCCGGCCACGTGCCTCACCCAAACCCAGAATCTCTTGGAGGAAGAATGATAGAAGAGTCCAGCCCAGCCGAAGGATCATACTGCTTCGGAACAACACCCTTCGCATCATTAACTCCAGCCGCTCGGATGAGGGAAGCTACGTGTGCCGCGCGGAAAACCAGTTTGGATCAGCGGAGTTGATTACCATGCTTCTGGTGAAAGAGCCCATGCGGGTGGAGTTGAGCCCCATCCGGGTGGAGGTGACGGTGGGAGAGAGTGTGGTGCTCAGCTGTAAAGTCACTCATGACCCCTCGCTGGATGTGTCCTTCCTCTGGCTGCTCAATAACCAACCGCTCAACACCCAGCAGGAGGGAAGTCACTTCGAGTACATTCAAACACAGTCCTCCACAGCAGACCTGATGATCAGAAGCATCCTCCTGAAGCATGCTGGGAAATATGGCTGCCGTGCTCAGACGAGTGCGGACAGTGTACTTGCAGAAGCTGAGCTGCTAGTAAGAGGCCCTCCTGGACCTCCTGGAGTGGTGATTGTAGAGGAGATCACGGATACCACGGCGACGTTGTCATGGAGTCACGGCGTTGACAACCACAGTCCAATCACCACCTACAATGTACAGGCACGTAGCCCTGTCTCTCTGGGCTGGCAAACAGTGAAAACCGATCCAGACCCAGTGACAGGAAGCATGGAGTCTGCCATGGCAGTGGAGCTCAACCCCTGGGTGGAGTACGAGTTTCGGGTGGTGGCCACGAACGGCATCGGCACAGGCGACCCGAGCACCCCCTCCAGAGCGGTCCGCACTAAGGAAGCAGTTCCGTCGGTAGCCCCTGCCAACGTGAGAGGTGGGAACGGCCGCAGGCATGAGCTGGTCATATCCTGGGAGCCCGTCTCAGAAGAATTCCAAAATGGAGAAGGTTTCGGCTACATCGTGGCGTTCCGGGCCAATGGCACACGTGGATGGAAAGAGAAAATGGTGACCTCAGCAGACTCCACCACCTATAAATACAGAGATGAGACCTTCCCCCCTCTCACCCCGTTTGAGGTGCGGGTGGGGGTGTATAACAACAAAGGAGACGGGCCCTTCAGCGGGGTGGTTACTGTGTTCTCTGCAGAAGGAGAACCCAGGGAGCCTCCTTCAGAAGTGCAGGGATTCGCCATCTCCTCCTCCGAAATTAAAGTAACGTGGAAGCCACCCATTCCTGGCCCTGGAAGACCCCAAGGCTACGAGGTGAGCTTTTGGAAAGACGTGGAGCAGGAGGAGACGGGGAAGAAAAAGAGGACGACAGGGAATGAGACGACCATGTTGGTGTCGGGGCTGGAGGGAAACACACAGTATCTGGTCTCTGTGAAGGGATTCAACAGTGTCGGCCAAGGACCAGCCAGCTCAGCCATCAAGATCAGCACTAAGAAAAATGCCCCAAGTCTACCTCCAGGCAACTTGATGTGGATTCAGGAGGGGAACAATGTTTCTTTATCCTGGGATCCAGTGAAAGCAAGGGACAATGAGTCAGAAGTCATTGGGTACAAGGTATTATTGCGTCAGGAGGGACGGGGCCACAGCCAAGTCATGAGGACACCAAACTCAGCCGTTGTCCTGGCACTACCTGAGGGGGGAACATACATCATCGAGGTGCGTGCAGTCAGTGAAGGAGGTGAAGGAGCCGCCAGCGCTCAGGTCAGAGTGCTCACCTCCTCAGGT

Function

symbol description
cntn5 Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane. Predicted to be anchored component of membrane. Predicted to be active in neuron projection. Orthologous to human CNTN5 (contactin 5).

GO:

id name namespace
GO:0007605 sensory perception of sound biological_process

KEGG:

id description
K06763 CNTN5; contactin 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_04729544_04888382.mRNA True 3081 mRNA 0.54 21 4729544 4888382

Neighbor

gene id symbol gene type direction distance location
CI01000028_04441930_04444388 TTC36 coding upstream 285064 4441866 ~ 4444480 (+)
CI01000028_04240962_04247433 NA coding upstream 481122 4240122 ~ 4248422 (+)
CI01000028_04224432_04233899 NA coding upstream 495332 4224226 ~ 4234212 (+)
CI01000028_04216684_04219734 NA coding upstream 509767 4215386 ~ 4219777 (+)
CI01000028_04145294_04156879 NA coding upstream 570891 4144943 ~ 4158653 (+)
CI01000028_05039088_05063207 NA coding downstream 150706 5039088 ~ 5063207 (+)
CI01000028_05114584_05116494 RNF7, RBX2 coding downstream 225136 5113518 ~ 5117062 (+)
CI01000028_05120588_05127452 GRK7B coding downstream 231801 5120183 ~ 5129029 (+)
CI01000028_05178115_05181202 FZD9B, FZD9 coding downstream 288043 5176425 ~ 5181220 (+)
CI01000028_05488773_05490277 NA coding downstream 598650 5487032 ~ 5490635 (+)
G147482 NA non-coding upstream 134779 4587296 ~ 4594765 (+)
G147490 NA non-coding upstream 142432 4583799 ~ 4587112 (+)
G147495 NA non-coding upstream 177890 4551430 ~ 4551654 (+)
G147337 NA non-coding upstream 278792 4447984 ~ 4450752 (+)
G147367 NA non-coding upstream 289498 4439839 ~ 4440046 (+)
G147583 NA non-coding downstream 198338 5086720 ~ 5086994 (+)
G147595 NA non-coding downstream 219236 5107618 ~ 5107943 (+)
G147604 NA non-coding downstream 235707 5124089 ~ 5124417 (+)
G147608 NA non-coding downstream 243912 5132294 ~ 5132505 (+)
G147610 NA non-coding downstream 249215 5137597 ~ 5137899 (+)
G145843 NA other upstream 1705324 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 4207613 524647 ~ 535245 (+)
G147462 NA other downstream 70321 4958703 ~ 4989838 (+)
G147636 NA other downstream 327708 5216090 ~ 5216611 (+)
G147693 NA other downstream 552072 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 2581510 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 3413865 8302247 ~ 8504940 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location