G147464


Basic Information

Item Value
gene id G147464
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 5258869 ~ 5263908 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU167494
AGCTTTACAACCTTAAAAAGTTTTGCGCCTCTTTGCGCCTAACACACTTAAGTTTTGATGCAAACACTAGCATATGTTAAAGCCTTTAAAAGTATACCCCATTTGATAACCTGCACTAACAGTTGCTCGACAAACGCACACCAGAATGTTTTAATGTTTTGTTCAGTGTCTGAACAACAACAAGCACAATACGACGCAAAAGAGAACTTAGTTCAGTACTCGCACGCTGCGTGACAGGCTTCTAGTGTGCGTGCGCTTCAGGTGTATGAATAAAAAGGTTAACTGGCAAGGCTTTAAAACTCTTGCAAATAATAGACTTTCATGATGGTGAACAACTGCAATGTCATGCGAGTGTAACCCTACTGCTGCATTGCTAAATGTCATGTTAATGTATGTTGCGTACAGTATGTTGGAATGTACCAGTATGTAGGGATGCCAGAACTGCAACTGACAGAATGTGCACTGTAGCATGATACTATGATCTCTCTTTTTTTTCCTTGTTTGCAATCTAAAATCGTGATATCGCACACCCCCACTAAACCCCCTCACACTTCGCTCATCAACACGGGAGTCTATTGTTTTTGAGGTCTCCAGTAGTTCATAGGTGTTCCATCTCTCTTTTTTGGTCGTGAAACAACGGGTGTATGCATAAAAACCGAAGCTTTACTTTGGGCTTTACACTTCTTGTATGGGGGAAAAAAAAAAAAGCAGTTTGGACATTCTACTTATTTTGTGTCAGACAAAAAGTCATGCGTGTTTGGAACAACAATGGTAAACTATTCTTAAAAGTAAAGCTGTTAGACTGCACAATAGGTAGTGGAAATGACAACTTACATGGTTTGGATCCAGGAGAGAATCCACCCAATGTGGAGAGAGCAGGAGTGCCATCTGGATTCAGTCCTTTGGCTTTCAGTTTGGCTTCCTGTAGAGCCACCTTCCTCTTGTCCACTTCCTTCTCCAGGAATTCATAATTTGGCTTTTTTTCTGGTGTACAATTTAAGAGTGGTTGTACATATATCTTTGATCTCCTCCTCTGTAGCACCAAACAACAGGTACCAGAGTGGCCGAGAGGGTAGCGATATCTGAAAGAATGATGGGAAAAGTCTGACATTAACAACACTACATCTCAGAGTAAACACAAGCAGAGGTGATGAAGGACAGAGAACGGTTTTGTACCTGTAGCACTCGTGCAGCGAGGTAAATGCAGGCACAGGCAATGGTCTCAGCTTGAAATCTCACAAACACATTAGTGCGAAGGCTGTCATTCATGTAGTTCCTGCAACACAGAAGGTGAACCACAAAATTGCCATTTCCCTGCATGGGTTGATCATCCATAACTTCATCTTTAAGTACGAGGTTTGCCACATGATGCAAAAAGACCAAAAATAAATGGAGGCTTGAGTTTAACTTTGTCCTTTTCCTCTCTGCCTCACGTTCCTCTGTCGTTCTACAGAAGGTTTAAGGCAAGCATGCAGTGTGAACGGGCACACGCACACGTTCAGTGAACCCATGTGCGCATAGATAAGCTCATGGGAGGACATTTGTCAAAACATATAACTGGTTTGCATGCAACAAATTACTACAACTTAGAGCTGCACGATTAATCATTACGAGATCGCAATCTCGATTCAAACACCCAGGTGATCTCATTCCTAAACGATTCGCCTGTGTCTATTAAACCTTTCACAAAATCACAACATAACTTTCAAATCCGCGTCGGCGCTGCTGCTGAGCCAGAGAGAGCAGTTGTCATGTACAAACAGTCTTTAACAACACAATATTGTCATTTCTGTGTTATCACAAAAGAACGAAGATAAAATTTTATAGTTCAGATATAAACACTGATGTCTATGGAAACGTAATCACCTTTTGAAAGTAACATGACACTTCATTCAGTAAAGAGGTTTGTTTAAAAAAAAGCTGATTCATCCATTAATGAAACAAGTGAAGAATTAATGAGTCATTGAATCATTCATTCAAACCGATTTTTTTTTTTTTTTCAGATTCATTAAACATTTTAAATAGACTGTAGCAATTAACATTTGTCAGAACCTCTAGTAAATTACGTTATTTTGTTTAGATGTCTGTTCAGAACCGTGATCTCAGTTTGAAACAAAAGAATCGTGATTCCAAATGTATCCAGAATCGTGCAGCTCTACTATAACTTCATCCATTTTTACAAAATACAATTTTAAATAATCGCTTAACTTTCCATAAAATAAGCAGATGAGAGTGTAAAATGGAGAGAAAGGGAATTTTTACACAGCAGGGATGTAGCACTGATGACTGCATGCAACTGATAACAATATATACGGCATGCAAAGCGGGCTGAGAGGATCTGCCCTGGGAATGGACAAATACACATCTCCTGTAGTATGGAGACTTGCAGAAAGACAATAAGCTTTAACTTCAACTCTGAATGACTGCCAGAAATGAGATGCAAAGCTCTCTGAAAAAAAGCAAACAGGCAGATGGATACTATGGACCCAAAACGCTGTGTCATTCTGACAAGTAAGGGAAAGACTACATTGATGTGCATTATGCTTAAATAGAAACACAGATTTTATATTGCAGGCCAACTAGGGTTGGGTATCGTTTGAATTTTAACGATTCTTCTAATTCCAATTCCGATTCTGCTTATCGATTCCAATTCTTTATTTCCAGTTTCGATTCCAGTAAGGTAAAAACATTTAGTCAAACATTTATATCAAATTTATTCTTTGTCTTTTGGCAAAATGTTTTGTTGCAGCTGATTTCCATAAACAAAAATCAGCTGCCCAAAAAAAAAAGCCTAAAGAACACTAACATTTTCCTATGGTTTTAACAAAAATACCACAGCATAAACAAATGGACTATCTAGTATAAATTTCAAACATTAAAGACAAGTAAACAGTAAACAAATAAACAATAGCACAAATAAATACAACTGAACAAAGTTCAGGTACAGAAATTGTAATCAAATGTAAAATAACAAAAAATGTTTGTTCTTTGATTAACGTTAATGACAGACCGCAGCAGGTTTATAAGGCTGCTGTCACTTTAAGACCTCATGCAAAATCCAATATGCCTTTTCCTTCTCAACTGTTTACGTTCAGTTAAGACAAAACGAGTACAAGAACTCTACTCATATTGTGCACTATATGAGAGATGGCTCTCTGCGCGAGCTTTGGATGTGTGAGCAAAGAAAACTGAGTTCCAAATTGCGTTCTCTTTTGCATCTTCTTGTGCTAGAAAATGGTTTGAAATCACAGTAAAATGCAATATGCGGAATCGAACACAAATCGATAAGCGGAATCGAAATTTTAATTTTATTACAAGTGTACGATTCCAGAATTGAATTTTGATTCCCAACCCTACTTAGAACATTTGATTTTTATGCTGAGCTTCAAACATGTCGTTCAAGTGTAGACTGAGCAGGAGAGAGTTCCTGTAAGACACAACGCCTCACACCAAATTATTGCGATAATTGCATATTTAAAGGAATAGATCACCCAAAATAAAAACCGTCATTTACTCTCCATCATGTCATTCTAAACCAATTAAAGTTTCCTCAGTGGAACACACACACACAAAAAAAGAAATATTTACCAATGTTCAATGTTCAAGATCCCCCCCACCCCATACAATGGAAGAATATGGTGAACAGAGGCTGTCCATCTCCAAAATAAATATAAAAGCTTGAAAAAGCATATTGTGCACCATATTACTACTCTTCTGAAGCCGTATAATAAGCTTTGCGTGTGGATAAGTGGCCATTCAGCAAAAATTTCATCACCCAGTAGAGGTCTCAATACTATTTACACTACACATATGCAAACAAGCTAGGTTTGACACGAAAGACTATGATTTTTTTTTTTGCATGTTTATAACAAAATCTGGGAGGAACAATTACAAATGGTTTTTAAAAATGTATCTTCGATACAAATCTAACAAATTTAAACAAAACAAATTCTGGCCTCCATTAAAAAAAAAAACAATTACACTACGAATCTTTATGCAAGCTACAAATGTGACATACCAAGTTTATGTAGAAGCACACAAGAGATCATAGAGGACATGATTCAGCTTAAATTTCAGAAAATAAAGAGAACAATGACCACTTTTTCTGCCTTTTTACATCTTGACAGCCTCTGGACACTATATGCTGTCAATGTATGGAAAAGAGCAACGTGAACAATTTAAAATTTATACTAAGCTATTCTATGGGAAAAAAAGAATCATACAGGTTTGAAAAGACATCAGGGTGAATGACATCAATTTTCATTTTTGGGTGATTTACCCTTTAATTTGGAGTACATTTAGGAATGAAAAAAGAAGACTACTTATACTACCACTTAAATCTAATTAGTGAAGTCTAATAATGAAATGCAAATATTCAGGTTTTAAAACTACCTTATAAAGGTGAAAGCAAATAATTAAAAAAAAAAAAAAAAGAGAGAAAACTTGAGACTTGAAGCAAAAAAAATACAAATCCTTTTGGACAACCGCAAGAAAACAAGATGCTGATGGCAGCTGGAAAAGGCCCCCTTCAGTGATTCTCGGGCAGAGAGCTCTCACTGGATTGGCTGTCTCGAGAAGGGCAGCCAATGGGGGGAGATTCCTGAGGTCATGTGGTTGGAGGAGCAGAGTTCAGAGGTTCTTTATGACACTTACCATCATGGACTACCCTTTAATCAAAGAGTAGAGAGAAAGGACAGAGTTAAACTAAGCTCTCCATTTTCCTTTAATTACAGCCATGAACAAGAGATTTAAAACAGAAGACACACCAACACACACATGAGCCACGAATACACCAATCCATCAGATGAGGGGACAGAAAAGTTACGTAAGCGGGTTAATTACTGGGCTGGTTACACCGCAGTGTCTAGACACCCAATGCAAGATAGCTTATTTACTCACCATGCTGTCTGGACCAACGTTTGGTTCTTCTCACATTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU167494 True 4940 lncRNA 0.38 2 5258869 5263908

Neighbor

gene id symbol gene type direction distance location
CI01000028_05178115_05181202 FZD9B, FZD9 coding upstream 77649 5176425 ~ 5181220 (+)
CI01000028_05120588_05127452 GRK7B coding upstream 129840 5120183 ~ 5129029 (+)
CI01000028_05114584_05116494 RNF7, RBX2 coding upstream 141807 5113518 ~ 5117062 (+)
CI01000028_05039088_05063207 NA coding upstream 195662 5039088 ~ 5063207 (+)
CI01000028_04729544_04888382 CNTN5 coding upstream 370487 4729544 ~ 4888382 (+)
CI01000028_05488773_05490277 NA coding downstream 223124 5487032 ~ 5490635 (+)
CI01000028_05507920_05512856 ZBTB38 coding downstream 242970 5506878 ~ 5512879 (+)
CI01000028_05513089_05514983 NA coding downstream 249068 5512976 ~ 5515363 (+)
CI01000028_05529016_05564762 RASA2 coding downstream 265108 5529016 ~ 5565685 (+)
CI01000028_05619764_05627731 NA coding downstream 355856 5619764 ~ 5627731 (+)
G147461 NA non-coding upstream 805 5245431 ~ 5258064 (+)
G147638 NA non-coding upstream 39518 5219032 ~ 5219351 (+)
G147637 NA non-coding upstream 40328 5218293 ~ 5218541 (+)
G147635 NA non-coding upstream 42847 5215225 ~ 5216022 (+)
G147612 NA non-coding upstream 110906 5147498 ~ 5147963 (+)
G147688 NA non-coding downstream 143877 5407785 ~ 5434328 (+)
G147696 NA non-coding downstream 163673 5427581 ~ 5486713 (+)
G147753 NA non-coding downstream 225026 5488934 ~ 5489155 (+)
G147784 NA non-coding downstream 381255 5645163 ~ 5645483 (+)
G147636 NA other upstream 42258 5216090 ~ 5216611 (+)
G147462 NA other upstream 269031 4958703 ~ 4989838 (+)
G145843 NA other upstream 2234649 3023146 ~ 3024220 (+)
CI01000028_00525538_00533862 NA other upstream 4736938 524647 ~ 535245 (+)
G147693 NA other downstream 176546 5440454 ~ 5453610 (+)
CI01000028_07470324_07471346 NA other downstream 2205984 7469543 ~ 7471432 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other downstream 3038339 8302247 ~ 8504940 (+)
G150398 NA other downstream 3527827 8791735 ~ 8792120 (+)
CI01000028_09661097_09682326 NA other downstream 4409219 9660747 ~ 9684876 (+)

Expression


Co-expression Network