CI01000028_09661097_09682326


Basic Information

Item Value
gene id CI01000028_09661097_09682326
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9660747 ~ 9684876 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000028_09661097_09682326.mRNA
GTATAAAAGGGCACCTGTAAATTACATCATTCACTTCTTGTCTGAAGGAGACCTGTGCAGGAATACCGGAAGCACAGCAAAGGGACGCAGCATCTCGTTCCCTATTCTCAGGGAACCATGTTTACATGCATAACCTGAGACATTTTAAAACTTTTGAAAGGGAACTTGCTCTGCATCCCCTAGGGGTCGCTATGGGGAACAGTATACCCACGCTGCCATGCTGAAGGGATGAGTGCCCTAATGGCCGAGCTAAGTCAAAAGACTTAAGGAGGCAACACTCTAATCCAAGGGCACTGCAGAGTTCAGTCCAGCTGGCCCACGAAGCTCCACAGAGTAGAGGCCTTAAGAGAATGACTCTTACAATGAGAGGAGACCTAGCAACACTCTCACTGAGAATCTCAGATCAGATCCAAATGTATCAATGGCACTTCGGCTGGATGGATACGGTTGCTAAGAGACATGAAGGGGGAGGTAAAGACGGACAGACATTTATCTGTGTGCAGGGGCAGTTCTCACCGCTGGACGGTTCGGTACGTGCCACACCTCCTGACTTCAGCGCCCAGCAACATGACACTGTAACAGAGACCATGTTTGGACTAAAAGCACCTCTCTACTACCTGCCAGCGCTGTTGCCTTGGAGACGGTGTCAGACGCACGGGTTCTTCAATGATTACTTGACAAGAAAAAAGAGGCACATTAAAGGAACAGAGGAGAGAGACAGAGAGCACTGCCTGCAAAAAAGTCTTGGCCTACTAGGTCTCTTTCAGTTGCCTGAGAGTGGTGCTGGTATCAGGGCAAACAGACTTGCTGCTATCAGACTCTCAATTCAATTCGGTAAAGACTCCATTACCCTTGGACCGCATTTTGGCAACATTAACGCTCGGTTATCTTTGGATGTTCTTGTCATTTGCGATTTTTCACATGATTTGATTGTTTGCTTGCCAGAGGGGATTCTAGAGGAGCCAGAGCAACGGGATAGACGGGTTACATGTGGCAGTTACTCACTTAGAAAAAAACAACAAAGATACAATAGGAGGAAAAACAAAAGATATCAAACACATACGGCCATTGTCATCAGAAAAGAAATATTTTTAAAGGAAGCAGCGTCAGTGGATCGTGGGTTGACGTGGGTGCATCTGCCTGCTGTATGGTTGCCCAAGTGTGACCTGCTCTGCGGGGCTGGAGAACAAGAGGAGATTGTCTATAAACAAGTAAGAAGAGAGTACGAGAGCAAAGCGGGGGCGAACAATCTGCTTGCAGGCTCGGCTCCAGCACATGGTGGGTGCGCTCAGATGGAAGAGGCAGAGGATGACAGAGCAAGGAGCTCTGATGGCGGGAGTCTCCATATGGCGACTGTGGCCCGTTAGCCGGTCAGCAGGCCATAGCGCTTCTGGGGTCCAGGGCTGCCCCGCTTGCCTGGTGTGGGCACACAGAACAGAGGAGGACAGCTGGAGTGGGCACGAGGCTCGAGGACAGATTTGGGGGCGGGCGAGAGGTGCCAGCTCTGAGCTCAGTGGGGAGTGGCGGGAGATGGCTGGCAAGCGCAGAACAAGCATATGGAGGGCAGGTTGGTACTTTGACTGGCGCTGTGGCACGCACCTGCAGTGGGTGAGAAGCAGCTCAGAAGCCGTCCCACCCTTCCAGTCAGACCCCGTTTTAGCCCCTCTTTTTTTCCCATAACCCCCTAGTTCCGTTCCTGGCCCACCAGTGCAGCTCACAGCCAGAGGGGAGGTGTGCTGTCTCAGCAGGGAGCAATACTCCACCACGCTGACTCGTTCTCATTTACACAATTTCTCCTCCCTCTACATTCTGTTCATTATTTGCACTGTACTCGCACATTGAATTCATCTTAATGTGGATTACTGGTGCTTTACTGTTGATGCAACTGAACTGTTGACACAGTGCTCTAACAACAGACCAGAACACACATCGTGTTTCATGTCACCACCTCTCTCTTTCTCTCTTTTTGTCTGTCTGCCTGCCTCTGTAAAGATAATGTACAGTTCTAGAAAACAGCAAGGTCATTTTAGGTGCTGTTCTCCAATTAGCGTTTTCATTATTCCCCCTTGAGTACTGGACTGAAAGCTGTGAATTAATGAGGTGCATGTTTGTGTGAGCGTTTTTTTAATGCACCAGAGCAGTGCAGAGGGTTTAATCATGTCCGCACAGTGGTACGCTACAGAGCAGCAGTCCTTTCTGGTTGTAACAGGAACAAAAAAATTACACTTTTTCCAAACAAACACATAAAAAAACACACACAAAAAAAATAAGTTGAATCTTAGAACTAATAATGAATTAAATAATGGAAACATACAACAGAGACAGTTAATTGGACTGTAATACTTTGGTACTAATGAGCTGTTAATTGCCTTCCGTCCTCCATGCTTCTACTTTATTTTCAAGTTTTTCTCTTAAAAAAGAAAATTCTGTCATCGTTTGCTAATGGTGTTCCAATTTTTTAATATCCGGGCCACTCTTTTCCATATCATAATTGTGACTGGGGCTATCAAGCTCCAGTATGAA
>TU171468
GGTTTCTCCTCCTCCTCCTCCTCCTCGTGCTGCTAGAAGACGCTGAATGAGTGCAAGAGGAGAGAGAGAGACTGAGAAAGGAAGACAGCTCTCTCCACATATCCTCATCCTGGGATGGAGGAAGAGACTCGCCATCGTGGGACAAGCCTCTTGAAGGATTACTTCTATCGCTTTTCAGCATGAAACAATAAAACACAATCACAGTGCTATTTGCTTTTTCTTTTTTTTTCTTTTTTCCTTTTTTTTTTTTTTTTTGCTGGGTCTATCTTGTTGGTGACCCCCCTATCTGACCCTGCACATACACACTCACACACACAGCTCACCCTCCATCAGCCTGTGAATCGGGGTGATTCAGAGATGACAGGTTGACTAGTGAGGTCTGTTAACCTCAAACCTTTAGCCCGGCTGTGGGTGCGTAGGGGCAGTTCTCACCGCTGGACGGTTCGGTACGTGCCACACCTCCTGACTTCAGCGCCCAGCAACATGACACTGTAACAGAGACCATGTTTGGACTAAAAGCACCTCTCTACTACCTGCCAGCAGCGTCAGTGGATCGTGGGTTGACGTGGGTGCATCTGCCTGCTGTATGGTTGCCCAAGTGTGAGTAAGGAAGCATGTTGTCTTCCATTACATTCTATGCCCCTAGTGAGAAACTGACATGTGAAGTTAGACAGCTGTGGTGTAGAACTCAACTGTAAACACCTCTCTTCCACTTGTCAGTAATGTAAGGTATAAGCTTTGAGACGAAAAAGCTTTCTTTCTTTGCAAAGGCTTAAGCCTGAAGAACACTGCTATTGCTTGTGTTTGCTTATATCTGTAAACTTGTGCATGCTTGTACTTGTTTGATGGCTCGTTGTCAACCAGAGAACATGCTTCTTGGTATAGACGTTATCACAGCAGTGTTTTGGTATGTCTATAAATGCTGACTGTTGAGTGTTTAGAAAAGACAGATTTCATGATATCTATTCAACCGTTCAGCTGTATCAATATCATGCCTTTATAAAGTTAGTCTCACTACAGGCTGGTCTCTGTTCATCTTTCTCTCCTTCTGTCTGGATAACATATAGCTCCACAAGCTCCCTAATAGGCCGTTTGGTCAGTGAAGGATTGTGGTAACGGGGGTGAAGGCCAAGCTAGCTTACCGTGATTGAGAGGTCAGCTTTGGCTGGCAGAGGATGAGAAGATTACCACTCTCAACATCTGTTTATTACAAGATGGGCCGTATGATAAAACAAATATCACTGCATGTGCGTGTGTTATATATAAGTTTAGTAGGGATATAGGGATTTATGGGTAATTGAGAAGCACGGCTGTAGGAAGTGTCACACAAGGCAAATGCAGGGAAAGCAAACACAATAAAGTGCATGAAGAGGAAGGGGTCGTGTCAAACGGAGCTCAGAATATCGCAATGGTTCATCTATTTCTGAATGTTTGTTTGGTCTAGCCTGCTCTGCGGGGCTGGAGAACAAGAGGAGATTGTCTATAAACAAGTAAGAAGAGAGTACGAGAGCAAAGCGGGGGCGAACAATCTGCTTGCAGGCTCGGCTCCAGCACATGGTGGGTGCGCTCAGATGGAAGAGGCAGAGGATGACAGAGCAAGGAGCTCTGATGGCGGGAGTCTCCATATGGCGACTGTGGCCCGTTAGCCGGTCAGCAGGCCATAGCGCTTCTGGGGTCCAGGGCTGCCCCGCTTGCCTGGTGTGGGCACACAGAACAGAGGAGGACAGCTGGAGTGGGCACGAGGCTCGAGGACAGATTTGGGGGCGGGCGAGAGGTGCCAGCTCTGAGCTCAGTGGGGAGTGGCGGGAGATGGCTGGCAAGCGCAGAACAAGCATATGGAGGGCAGGTTGGTACTTTGACTGGCGCTGTGGCACGCACCTGCAGTGGGTGAGAAGCAGCTCAGAAGCCGTCCCACCCTTCCAGTCAGACCCCGTTTTAGCCCCTCTTTTTTTCCCATAACCCCCTAGTTCCGTTCCTGGCCCACCAGTGCAGCTCACAGCCAGAGGGGAGGTGTGCTGTCTCAGCAGGGAGCAATACTCCACCACGCTGACTCGTTCTCATTTACACAATTTCTCCTCCCTCTACATTCTGTTCATTATTTGCACTGTACTCGCACATTGAATTCATCTTAATGTGGATTACTGGTGCTTTACTGTTGATGCAACTGAACTGTTGACACAGTGCTCTAACAACAGACCAGAACACACATCGTGTTTCATGTCACCACCTCTCTCTTTCTCTCTTTTTGTCTGTCTGCCTGCCTCTGTAAAGATAATGTACAGTTCTAGAAAACAGCAAGGTCATTTTAGGTGCTGTTCTCCAATTAGCGTTTTCATTATTCCCCCTTGAGTACTGGACTGAAAGCTGTGAATTAATGAGGTGCATGTTTGTGTGAGCGTTTTTTTAATGCACCAGAGCAGTGCAGAGGGTTTAATCATGTCCGCACAGTGGTACGCTACAGAGCAGCAGTCCTTTCTGGTTGTAACAGGAACAAAAAAATTACACTTTTTCCAAACAAACACATAAAAAAACACACACAAAAAAAATAAGTTGAATCTTAGAACTAATAATGAATTAAATAATGGAAACATACAACAGAGACAGTTAATTGGACTGTAATACTTTGGTACTAATGAGCTGTTAATTGCCTTCCGTCCTCCATGCTTCTACTTTATTTTCAAGTTTTTCTCTTAAAAAAGAAAATTCTGTCATCGTTTGCTAATGGTGTTCCAATTTTTTAATATCCGGGCCACTCTTTTCCATATCATAATTGTGACTGGGGCTATCAAGCTCCAGTATGAAATAAACATGCACTGTCATTGTCAAGTTAATATTTAATTTACTAATAATCCTGACATCAACATCAGCAAGCTTTTTTTCCAGGCTATCACTGCAAATAAGAAATTCGTTCTTAATTGACTTCCCTGGTTAAATATAGAGGTAAACAAGTAGCAATGTTTATAAATGAATCATTCTCTTCACATCTTTTTAATGAACTGGGGTTTCCTGTACAACGACGTAACTCGCTGCTTAACTACCATAGTACAACCCGAATTCCGGAAAAGTTGGGATGTTTTTTTAAATTTGAATTTGAACTAAAAGACTTTTAAATCACATGAGCCAATATTTTATTCACAATAGAATATAGATAACATAACAAATGTTTAAACTGAGAAATTTTACATTTTATGCACAAAATGAGCTCATTTCAAATTTGATCCCTGCTACAGGTCTCAAAATAGTTGGGACGGGGGCATGTTTACCATGGTGTAGCATCTCCTCTTTTTTTCAAAACAGTTTGAAGACGTCTGGGCATCGAGGTTATGAGTTTCTGGAGTTTTGGTGTTGGAATTTGGTCCCATTCTTGCCTGATATAGGTTTCCAGCTCCTGAAGAGTTATGGTCGTCTTTGACATATTTTTCTTTTAATGTTGCTCTAAAATCTTTATATACCTTTCAGCATTCATAGTGCCTTCCAAAACATGCAAGCTGCCCATACCATATGCACTTATGCACCCCCATACCATCAGAGATGCTGGCTTTTGAACTGAACGCTGATAATACGCTGGAAGGTCTGCCTCCTCTTTAGCCCGGAGGACACGGTGTCCATGATCAAATTTGGACTCTTCTGACCATAGAACACTTTTCCACTGTGAACCAGTCCAATTTAAATGATCCTTGGCCCACAGGACGCAATGGCGCTCCTGGACCATGTTCACATATGGCTTCCTTTTTGCATGATAGAGCTTTAGTGTGGTTTCTGAAAGTATTCCTGGGCCCATTTAGTAATGTCATTGACACAATCATGCCGATGAATGATGCAGTGTCGTCTGAGGGCCCAAAGACCACGGGCATTCAATAAAGGTCTTCGGCCTTGTTCCTTACGCACAGAGATTTCTCGAGTTTCTCTGAATCTTTTGATGATGTTACGCACTGTAGATGATGAGATTTTCAAAGCCTTTGCAATTTGAAATTGAGGAACATTGTATTCCACAATCTTTTTGCGCACTCTTTCACAGCTCTGCCCATCTTTACTTTTGAGAGACTCTGCCTCTCTAAGACATCCCTTTTATAGCTAATCATGTTACAGACCTGATAACAATTAACTTAATTAGTTGCTAGATGTTCTCCCAGCTAAATCTTTTCAAAATTTCTTGCCTTTTCAGCCATTTTTTGCCCCTGTGCCAACTTTTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000028_09661097_09682326.mRNA False 2523 mRNA 0.47 10 9660747 9683482
TU171468 True 4196 TUCP 0.44 2 9673127 9684876

Neighbor

gene id symbol gene type direction distance location
CI01000028_09517515_09519873 GSE1 coding upstream 140696 9517515 ~ 9520051 (+)
CI01000028_09455235_09456745 NA coding upstream 203969 9455235 ~ 9456778 (+)
CI01000028_09438121_09447264 ATMIN coding upstream 213278 9437945 ~ 9447469 (+)
CI01000028_09420414_09428472 CENPN coding upstream 231918 9419436 ~ 9428829 (+)
CI01000028_09393014_09393339 NA coding upstream 267267 9393014 ~ 9393480 (+)
CI01000028_09715717_09725995 NA coding downstream 32235 9715717 ~ 9726018 (+)
CI01000028_09734656_09750703 GSE1 coding downstream 49499 9732981 ~ 9751123 (+)
CI01000028_09798069_09800552 COX4I1 coding downstream 114587 9798069 ~ 9800598 (+)
G151029 NA non-coding upstream 146802 9513717 ~ 9513945 (+)
G151010 NA non-coding upstream 248938 9411437 ~ 9411809 (+)
G151009 NA non-coding upstream 249831 9410698 ~ 9410916 (+)
G151008 NA non-coding upstream 250652 9409354 ~ 9410095 (+)
G150991 NA non-coding upstream 288173 9372193 ~ 9372574 (+)
G151050 NA non-coding downstream 109482 9792964 ~ 9793174 (+)
G151060 NA non-coding downstream 117452 9800934 ~ 9802018 (+)
G151063 NA non-coding downstream 123714 9807196 ~ 9807690 (+)
G150398 NA other upstream 868627 8791735 ~ 8792120 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other upstream 1228195 8302247 ~ 8504940 (+)
CI01000028_07470324_07471346 NA other upstream 2190047 7469543 ~ 7471432 (+)
G147693 NA other upstream 4207137 5440454 ~ 5453610 (+)
G147636 NA other upstream 4444136 5216090 ~ 5216611 (+)

Expression


Co-expression Network