G151063


Basic Information

Item Value
gene id G151063
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9807196 ~ 9807690 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU171551
AATGCTGTAATATGTAATACAGAATTTGATGCTGATCTCTCAAAGGACTATTAAGTTCTTAAAAAGTTCTTAAAAACGGCACCTTCTGTTTTTCTTAGATAAAAGCAGACGTGTGCTAAACATTTAGTTAATAAAAACATGTTCCATTGTTTTGTAAATGCTGGGGTTCTGAGAAGCTTTGGAAGATAATGAGTTGTGGCATATAATAGGAATGAAATAGTAAATGTTCTTTAAATTATGTGTAATATCTGGTTAGTTCTTTGGCTTGAAATAAGGCCTTATACTGCACAGACCAAAAACATTGTATTTGTGTTTTAAGACGGATAGCAAGAGAAGTCACTAACAGAAGATTCTAGAGGGAAAAGACTAATGTGCAGCCACGGAGGAATACAAGAGGCAGAAACTATGCATGGCCATGGCTTCTTCATGAGTATGATAAGTCCTGTGCCTATTCTTAATTCTTGCCATAAAGTTTGTATTGCAGTATTTTAACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU171551 True 495 lncRNA 0.34 1 9807196 9807690

Neighbor

gene id symbol gene type direction distance location
CI01000028_09798069_09800552 COX4I1 coding upstream 6598 9798069 ~ 9800598 (+)
CI01000028_09734656_09750703 GSE1 coding upstream 56073 9732981 ~ 9751123 (+)
CI01000028_09715717_09725995 NA coding upstream 81178 9715717 ~ 9726018 (+)
CI01000028_09661097_09682326 NA coding upstream 123714 9660747 ~ 9684876 (+)
CI01000028_09517515_09519873 GSE1 coding upstream 287145 9517515 ~ 9520051 (+)
G151060 NA non-coding upstream 5178 9800934 ~ 9802018 (+)
G151050 NA non-coding upstream 14022 9792964 ~ 9793174 (+)
G151029 NA non-coding upstream 293251 9513717 ~ 9513945 (+)
G151010 NA non-coding upstream 395387 9411437 ~ 9411809 (+)
G151009 NA non-coding upstream 396280 9410698 ~ 9410916 (+)
G150398 NA other upstream 1015076 8791735 ~ 8792120 (+)
CI01000028_08302370_08504940 SPON1, SPON1A other upstream 1374644 8302247 ~ 8504940 (+)
CI01000028_07470324_07471346 NA other upstream 2336496 7469543 ~ 7471432 (+)
G147693 NA other upstream 4353586 5440454 ~ 5453610 (+)

Expression


Co-expression Network