G149467


Basic Information

Item Value
gene id G149467
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 7324800 ~ 7326970 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU169769
TTGGGTGAACTGTCTCTTTAATGTAACGAAATATCCTATCTCGACACAAATGTATTTTATTAAAATCAGCATAAATTCAATACAACAACTGCTGTCATGACCTATGCTTACTTGTGTACTTTACAATATAAATATCATTATTTATTATTATTTTGCATTACATTAATGAGAATATGATGGAGAAATAAGCTTAATTAGGCAAAAAAAAAAAAAACTTTTGTCAGTATATATAAATTTTTTTTATAGATTTTTTTTGGATGAAATGAGACAAATAAGAAAATGCTGTTTTTCATGAGATTCACAAAGGCGTCTTGTATGCACAAAAGCACACTGGATATCCTTTACAGAACTATAAAGAAACCCCAAACTACTGACTCTCAAGACATGATGTTTATCAAAAACCTGCTGTTATTTATTTCAGTATTATACATTTTTAAACGTTAAAAACAGCTGTTGTTTTTCTGGCATGTGCTGTTGGATGAGTTATATATATATGGACAAATTTCTTTTTGTCAGTTGTTTTGTTTTGCTTGTTTGTCATTTGTGTTCATGTATGGCAGAATATCAGTATTATCTTGAATGTGTCAGGCAGCTTTTATTGGAAAGCTGTTTGTTTTGATCTGTAACTCCTGAAATTGAAGCAGTCACTTTCCATCACCGACACACACACAAACACAGACATTCACACACCCTATTATATCATATTATATTAAATGGTCAGAAAATGATGCATGTTGATACTTTGTTTCTGCTCTGTACTGCATGGGTTTCAGCTTTAAAATCTTCCATGCTAGTTCAGTGTGTTATTGGCCATTAACACACAGCTCTGGATCTAAATAGAGATTCTGATGGCATTTCACTGTAGTGCGCTGGGATCTTTTTCATGCCAGGCCTTACTGTAGTTACAGTCCTTCCTGTATCACACAGAGCTTCAGTATCATTCTATCAGTCTCAACTGCTTTCTGATGGAGATAAGTGGTGGTTATGCATATGTCACAAGAATGGTCAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGGTTCTATATATTTTAAGCATTTGTTAAAATTTTGTGAAATGCTATTGGGGTAAGAAAAAGAAGCTTAATTCATCATATATTCTCTATAAAGAAGTCTCTTTTTTGCTCAAGTAAATTTATTTAGTATTTTTTGTTGTATTTTACTGGAAAACAACAAAAAAACAGCGATCAGTTATTGTTTTTGCATTGTACTGAGTTCAGATGAGCACAGCTGAAAATCACTTTCAGCATCAGTGCACAGAATCATTCAGGAGTTTTATGATCATGGGACCATTGTGTGTATGTGACCTTTGCTCTCTTTTTTTATTATTGTGTTATTTGTTCAGTTCTTATGGAACACAAATAAATGTGGAAGATTTACAAATGCAATTTGATAAAAATGCATATCACTTCAAATGGAAAATGATAAAATTGTACTAGAACACAAACAAATGAAAATGTAAAAAAAAAAAATCATTGAATGTTGATGTGTTTGTACATGGTTCTATTTACTGTCATATTTTAGATAAAGCCTTACCTCTGAATGGATGACATGTCATTGTAAACTGTTTGTTTCTCTGTCGTTTCATATTCTATTCATTTGCTTTATTTACATTTGTGAACTATAAACCCATAATATTCCTGGAAACATTATTTAGTTATACATTCACAAATGCCTCTTAAAACATTAATTTGCACATCTTAAAAATCTTTTCACACTGATCCAACAGCCCTGCTTCAGTCTTTCCTAAGCTCTGAGTTCTAGATGGTTTGTAATAAATTACATCCACATTATAGCAGCCAGTCCACAGTCTGATGCTCATTGTACTGTACTCTCATGCTTGTATAAAGACAGCTTATACAGACATTGATAGTTGCTGTAGTAATGCAGATCTGTTCAACATCTCATATCTCATATGTTTGCTTCTCCTTCAACTTCTTCAGATGGCAGATTGAGGTTTTTGGGGAGGAATGTCTCTTACTGAAGGACCAGAGAGTTTGTAGTTCCTGTAGCTGTAATTATTTCATGTGTTCATCAATGCAATTTCATGGAGTGATATACTAATGTCTAAAGCTGTTCAAGTCAAATAAATGAATTCAGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU169769 True 2133 lncRNA 0.33 2 7324800 7326970

Neighbor

gene id symbol gene type direction distance location
CI01000028_07257403_07298334 NA coding downstream 26466 7257177 ~ 7298334 (-)
CI01000028_07236259_07242539 NA coding downstream 81860 7236199 ~ 7242940 (-)
CI01000028_07209430_07220674 NA coding downstream 103999 7208209 ~ 7220801 (-)
CI01000028_07189923_07200164 NA coding downstream 124543 7189276 ~ 7200257 (-)
CI01000028_07148224_07150338 NA coding downstream 174308 7147894 ~ 7150492 (-)
CI01000028_07328793_07405548 MYO5A, MYO5AA coding upstream 1352 7328322 ~ 7406679 (-)
CI01000028_07424181_07428224 NA coding upstream 96995 7423965 ~ 7428549 (-)
CI01000028_07527725_07535631 ARPP19 coding upstream 199180 7525962 ~ 7535743 (-)
CI01000028_07569017_07616350 FAM214A coding upstream 242047 7569017 ~ 7617044 (-)
CI01000028_07627976_07631457 NA coding upstream 300802 7627772 ~ 7631539 (-)
G149637 NA non-coding downstream 31004 7293592 ~ 7293796 (-)
G149632 NA non-coding downstream 71690 7252794 ~ 7253110 (-)
G149480 NA non-coding downstream 96757 7170936 ~ 7228043 (-)
G149606 NA non-coding downstream 129249 7195141 ~ 7195551 (-)
G149657 NA non-coding upstream 45067 7372037 ~ 7373033 (-)
G149658 NA non-coding upstream 75673 7402643 ~ 7403873 (-)
G149713 NA non-coding upstream 176801 7503771 ~ 7503971 (-)
G149714 NA non-coding upstream 179618 7506588 ~ 7507049 (-)
G149704 NA non-coding upstream 193716 7520686 ~ 7521305 (-)
G149474 NA other downstream 92017 7229791 ~ 7232783 (-)
CI01000028_06969947_06983352 NA other downstream 352903 6965064 ~ 6984084 (-)
G149329 NA other downstream 623560 6699513 ~ 6701240 (-)
CI01000028_02441408_02445596 RPL35A, GM10247 other downstream 4878487 2441332 ~ 2445596 (-)
G146238 NA other downstream 5164762 2147378 ~ 2160038 (-)
G149923 NA other upstream 647598 7974568 ~ 8024244 (-)
G150328 NA other upstream 1366428 8693398 ~ 8693743 (-)
CI01000028_09469357_09494746 NA other upstream 2149875 9469343 ~ 9494746 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G125240 NA non-coding NC_056716.1 CM032085.1 9802919 ~ 10037928 (+)
mexican tetra (Astyanax mexicanus) G136721 NA non-coding NC_035911.1 CM008314.1 32503820 ~ 32504037 (+)