CI01000029_07810274_07813211 (HLX1, HLX)


Basic Information

Item Value
gene id CI01000029_07810274_07813211
gene name HLX1, HLX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7809978 ~ 7813211 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07810274_07813211.mRNA
TCGTAATGGAAGTGCTCTCGGTCAAACTCATCGTCTTTGGGGCGTGTTGGACCCGTCTGTCAACTTCCATTGGCTCAGAAGGAGCCAATCAATAACGGAACTCCTGCTTAGAGCTTTTTGGACTCCTGTCTGGAGTTTCATACTTGAGGAGAAACGCAAGAGAGGGCAACTCCTTAAAGTACTCGTCGCATGCGAGATTCTCTGTCAAGCAGTTTTGGATTCTCCTGCCAGGATGTACACGACGGGATTGAATCCGTTCTACGCGTCGAACTTCAGCCTTTGGACTGCGTACTGTTCGGGTGGTTTTGGGGTGGATAGCATGAAAAAACCCTCGTTCTGCATTGCTGATATTCTGCACGTTGGAGATGCTGAGAACATCCCCGGGTCATCTTCGCTTATGGCCCATATTGGGGCCCGCGCGTCCGGATCACCGCTGCGCCCGTCCCCGGTCACTCCGGACGCGCGCTTGCACCCCGCGTCCGCGTATCACCGGCATGGAATACACTTGACATCTGCGTCCAGAGGCGCGATGCACGCGCAGTCCGCGCCCCCGCCGTCAAGTAAAGACCTCAAGTTCGGAATCGATCGGATATTATCCACAGACTTCGAGCCGAAGGCTAAAGAATCTCCATCTTTGAGAGATCTCACATCGATTGTTAGTCCGAATCGGCAGTCAGCAGTCCATGTGTCTGCCAGCCCGTACTTCGCGTCCATAGACCCGACCATGAGCGAAACCTCCTCCATGATGGGTTCAATAAGCAGACAATCAGGGCAACATCAGTTTCAAGACACCTTCCCAGGGCCGTATGCAGTGCTTTCCAAAGACACAATGCCACAGACGTACAAGAGGAAAAGGTCCTGGTCCAGAGCCGTGTTCTCCAACCTCCAGCGGAAAGGCCTCGAGAAACGTTTTGAAATCCAAAAGTATGTCACGAAACCGGATAGAAAACAACTGGCTGCCATGCTGGGACTCACCGATGCACAGGTAAAAGTTTGGTTCCAGAACCGGCGGATGAAATGGCGGCATTCCAAAGAAGCGCAGGCGCAGAAGGACAAAGAGAAAGAACAGCCGGATAAATCCGCGACCGAGACCGAGCAGAAAGAACGCGACGACTCCGAATGCGAAAGCGAACCGAGCGAATCCGAATTCGAAGACGGAGCGGAGGACAAAAGCGACGTGGACATTTCTGACCTCAACAAAGCCAGTGTGATTATTCCCAGCACGCAGGACACATCCAGCACAAACTCCACGACAGAACCGAGTTCAGCCACACAACTGCTGCTGTGAGTCATCGGAACCGAGTCATCTGATGTGAACACCTCAAACACACGAGTAAAGCGTCTTACGGGACAGAGACACAAAATAGAGCACAAACACACACAAACAGGCCTACTTGAGCCATCGTTTCATGTCTTCCATTGTGAAACAGACCCTTCGTGATCCTTGAGAAAGGAAAGCATCGCTCTGCCTTAACCGAACCACTCGCCCTTCTTTATGACGATTTGGGAATTGAATGTTCATGAATTAAGACTTGATTGTATTATATTTCGTCTGTAAGTATTTGCACTGAAAATGTAAATAAA

Function

symbol description
hlx1 Predicted to enable sequence-specific DNA binding activity. Acts upstream of or within hematopoietic progenitor cell differentiation and sprouting angiogenesis. Predicted to be located in nucleus. Is expressed in several structures, including axis; brain; cardiovascular system; digestive system; and prechordal plate. Orthologous to human HLX (H2.0 like homeobox).
hlx Enables sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including animal organ development; enteric nervous system development; and regulation of T-helper cell differentiation. Predicted to be located in nucleus. Predicted to be part of chromatin.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09339 HLX1; homeobox protein HLX1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07810274_07813211.mRNA True 1584 mRNA 0.51 4 7809978 7813211

Neighbor

gene id symbol gene type direction distance location
CI01000029_07615776_07640353 MIA3 coding downstream 169625 7615200 ~ 7640353 (-)
CI01000029_07592969_07600728 BROX coding downstream 209250 7591057 ~ 7600728 (-)
CI01000029_07580435_07584666 NA coding downstream 224539 7580308 ~ 7585439 (-)
CI01000029_07518076_07533630 DISP1 coding downstream 276120 7517278 ~ 7533858 (-)
CI01000029_07507652_07510065 NA coding downstream 299913 7507552 ~ 7510065 (-)
CI01000029_07820703_07833528 RHPN1 coding upstream 7464 7820675 ~ 7834085 (-)
CI01000029_07836385_07847829 NAPRT coding upstream 23036 7836247 ~ 7847829 (-)
CI01000029_07850412_07853905 NA coding upstream 36969 7850180 ~ 7854017 (-)
CI01000029_07946659_07953611 TSTA3 coding upstream 133191 7946402 ~ 7953611 (-)
CI01000029_08041274_08048935 NA coding upstream 227780 8040747 ~ 8049427 (-)
G156661 NA non-coding downstream 80773 7728966 ~ 7729205 (-)
G156659 NA non-coding downstream 90941 7718713 ~ 7719037 (-)
G156628 NA non-coding downstream 111102 7641036 ~ 7698876 (-)
G156633 NA non-coding downstream 156237 7643283 ~ 7653741 (-)
G156736 NA non-coding upstream 116548 7929759 ~ 7930343 (-)
G156718 NA non-coding upstream 407179 8220390 ~ 8226568 (-)
CI01000029_08237701_08245368 FDFT1 non-coding upstream 422984 8236195 ~ 8245368 (-)
G156850 NA non-coding upstream 454189 8267400 ~ 8267662 (-)
G156495 NA other downstream 440431 7365007 ~ 7371921 (-)
G156542 NA other downstream 639027 7170367 ~ 7170951 (-)
G154415 NA other downstream 2822553 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 3332766 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 4102726 3698572 ~ 3707883 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location