CI01000029_07820703_07833528 (RHPN1)


Basic Information

Item Value
gene id CI01000029_07820703_07833528
gene name RHPN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7820675 ~ 7834085 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07820703_07833528.mRNA
AGACTCAAGGCTTTTGTCTTTACTATCGCATCGCGCACTCGCTGATGCCTCCGTGTTGCCAAGGGCAACATTTATTTTTCCGCTCCAAATCGCCTTTATTCCCAACACTGTCGCCTCATTGGACGTTTCCCCTGTCCATCTGGTGTATTTATCGAGCTGTGATTGGCTATTGCATATGTCAATCAGAAACAGCGCGATTCTATTGGCTGAATCATGGACGCGATGCGAGAGCTCAGCGGTGGCTCGTGCGCGTACAGGCAACAAGTGGATTTTGTGATTTCGAGTGTATTTGATTCTTTATAGATCACATTATTGTGCTAAATAAATGTATTTAGACACATATACAGTTAAAGTCGTGTCTGGCGTGCGTTAAATAAGCAGAAAGGAGCCGTTAAGTGGCGCTTGTATTCTGACAGGAGCGTTTAACGGATTTACGGTTAGTTTGCGCAGTTTGATATCATGCGCTCGCGATTGTGTCTCGCGCGACCTGTTGCGCTATTGTGAGTGAACGCGCCCGGTGTAGGACAGAAAAGAGCATTAATATAGATGAGCTCATGATGTCTGACTCTGGATCAGATGAGGATATAGCAGCTGAGGACAGAGGCTCGACAGAGTCCGTCAGAAAGGGATGTGACCCTCTTGTATCAACCCAGCGCAGCAAACTACAGCAGCGAAGAGCTAAACTCAACCAGCAGATCAACCGAGAACTTCGTCTGCGGAGCGGCGCTGAAAATCTCTACAGGGCCAGCAGTAATCAGAAGGTGAAGGAGACTGTAGCGTTAGAACTGAGTTTTGTGAACTCAAACCTTCAGCTTCTGAAAGAAGAACTAGAGGAACTGAACAGCAGTATGAACGTCTACCAGACCGAGAGTGAGACAGTCAATGTTCCCATGATTCCACTGGGGTTGAAAGAGACTAAAGAGATTGACATGACTGTACCTCTTCAGGATTTTATCAGTGAACATTACGGTGAGGACGCGTCTCTGTACCTGAATGAGATCCGGGATTTCATGGAACTTAGACAGGCCATGCGTACTCCCAGCAGGAATGAAGCGGGGCAGGAGCTGCTGATGGAATATTACAATCAGCTGTATTTCCTGGATCAGCGCTTCTTTTCACCACACAGAAGTCTGGGGATTCATTTTCACTGGTACGACTCGCTGACCGGTGTGCCTTCCATTCAGAGAGCGCTAGCGTTCGAGAAAGGGAGCGTTTTGTTCAACATCGGAGCACTTTATACTCAGATCGGAGCCAGACAAGATCGTTCCACACTGACTGGCATTCAGGATGCCATCGATGCTTTCCAGAGGGCGGCGGGTGCGTTTCTCTTCCTGCAGGAGAATTTCTCTCATGCGCCCAGTCTGGATATGAGTGGCCCCGCTCTGAGCATGCTGGTCCGCCTCATGGTAGCTCAGGTGTCAGACGTGTATTCTCTGGTTCTTCAGGCGATGTCAGTGCCGTTACTGAAGGACTATGTGCCCTTCTCCTGGATCTCTATGGTTCAGGTCAAAACGCATCATTTCAGAGCGCTGGCCCATTATTACGCCGCTGTGGCGCTGTGTGACTGCTCAGGCATGCCTGATGAAGACGATGATGAAGGTCGAGAAATTAAAGCTCTCATACAGATTCACACCAGACGGCCGGACAAACTGAACCTCCAAGATCCGGAGGACAAACGGAGGCTCGGTAAAGCTCATCTGCGCAAAGCCATCATACGTCACGAGGAAGCCCTGCGTCTTCACGGCGTGTGTAAAATGCTTCGAAAGATGGACATCCTGCAGGAAGTTCTGTCACATGCTCATGCACGCTCACTGGAGAAATACTCTGATATTGATCAAGAAGATGATTTTTGTGAGGTCGCGGAGGCCCCGGAGATCCAGTCTCACACACAGCAGAAGCCTGATATTAAAACTCCTGATTTCATTGCCGTCAGAGTGACTGACATTTTCCATCGACTGGGACCGCTTTCGGTTTTCTCTGCTCGGAATCGCTGGGTGAGGCGTCACACGTGTTTGGTTCGAGGAGAGGCGGGGCTTGGGCTTACGCTTCGAGGTGATTCGCCGGTTCTGGTTGCTGGGGTGTTGCCAGGGGGATGTGCTGCGGAGGCGGGACTCCGTGAAGGTGATTATATCGTGGCTGTGAATGGTGCAGATTGCAGGTGGGCGGAACACGGCGAGGTCGTTCACGCGCTGAAGAGCTGCACGGAGAGAGGACTTGAGCTCGACGTTATAACTCTACAGTCACACGAGGTCGAGAAGAGGACGAATCTCTCACCCACTGGTGAAAGAGAGTGTCAGTCAGGCAGTCCGAGGAAAGCGGGTCGGGAATACGAGCGCGGATCCTCGTCTATATGGAACTGGAGCTGGAGGAGCGGGGGCGGCGGCAGCAAGCGACTCGGGAGCACGTTCAGTCTTTCCTTTGGTAACTTAAGAGAGGGTGAATCCATGTACTGAAAACACACCAGGAAAAGAAAGGAAAAAA

Function

symbol description
rhpn1 Predicted to act upstream of or within signal transduction. Orthologous to human RHPN1 (rhophilin Rho GTPase binding protein 1).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07820703_07833528.mRNA True 2481 mRNA 0.51 15 7820675 7834085

Neighbor

gene id symbol gene type direction distance location
CI01000029_07810274_07813211 HLX1, HLX coding downstream 7464 7809978 ~ 7813211 (-)
CI01000029_07615776_07640353 MIA3 coding downstream 180322 7615200 ~ 7640353 (-)
CI01000029_07592969_07600728 BROX coding downstream 219947 7591057 ~ 7600728 (-)
CI01000029_07580435_07584666 NA coding downstream 235236 7580308 ~ 7585439 (-)
CI01000029_07518076_07533630 DISP1 coding downstream 286817 7517278 ~ 7533858 (-)
CI01000029_07836385_07847829 NAPRT coding upstream 2162 7836247 ~ 7847829 (-)
CI01000029_07850412_07853905 NA coding upstream 16095 7850180 ~ 7854017 (-)
CI01000029_07946659_07953611 TSTA3 coding upstream 112317 7946402 ~ 7953611 (-)
CI01000029_08041274_08048935 NA coding upstream 206906 8040747 ~ 8049427 (-)
CI01000029_08083189_08089291 TBC1D7 coding upstream 248672 8082757 ~ 8089291 (-)
G156661 NA non-coding downstream 91470 7728966 ~ 7729205 (-)
G156659 NA non-coding downstream 101638 7718713 ~ 7719037 (-)
G156628 NA non-coding downstream 121799 7641036 ~ 7698876 (-)
G156633 NA non-coding downstream 166934 7643283 ~ 7653741 (-)
G156736 NA non-coding upstream 95674 7929759 ~ 7930343 (-)
G156718 NA non-coding upstream 386305 8220390 ~ 8226568 (-)
CI01000029_08237701_08245368 FDFT1 non-coding upstream 402110 8236195 ~ 8245368 (-)
G156850 NA non-coding upstream 433315 8267400 ~ 8267662 (-)
G156495 NA other downstream 451128 7365007 ~ 7371921 (-)
G156542 NA other downstream 649724 7170367 ~ 7170951 (-)
G154415 NA other downstream 2833250 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 3343463 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 4113423 3698572 ~ 3707883 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location