CI01000029_07850412_07853905


Basic Information

Item Value
gene id CI01000029_07850412_07853905
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 7850180 ~ 7854017 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_07850412_07853905.mRNA
ATCGTCTCGCGCCCGTCACCTCCATCGCGATCACCAAATCACCGCATTTCATTGCACAAGCGAAACTGTAAGGGTGATGCGGATGAGCGCGCGTCATGTTTACCTCTCAGCCATGGTGCCTCTTGTTCCCGCTTTAACACGCAGTGAAAGTAATCCACAGGACGCCAGTCATGGTGATAGAGGCTCCGCCACAGCCGCCGCAGTAAAAGCGAATGAACGAGTATCTGGAGCACGCGCTGTCCGCCCGCGTCTCCGTCACCACCGACAACCTGACGTCATTTTGCGCTTCTCGCAGGAGGAGCGCGCGGGGAGGCTGAAAAGAGCAGACCAGCACTTCTTAGTTTTCTTCTTCAGTCGTCTGAAATTGAACCAGAGTGGCCGTTATCAACAGGACTTCCCCTTCCTCTCGCTCTGTGGACGTGAACGCAACTTCCTGCGCTGTGAAGATCAGCCCATTGTTTTCACGCACCTGTTATCGGAGGCGGGACATGAGGAGCGTCTTTCCTACTGTGGAGGCGGAGCTAAACTGACCGTTCCGTTCCGCCCAGAATCTCTCTTCATGCAACCGGTCAGCGGCAGACTGTACCATCCTGGACCTGAGCGGGGTGGAGGGGTGGGTTTGGTACGATCGGCGTTGGCCATTGAGCTGAGTGCCCACTTTGAGTACGCCACGGGTCAGGAGAGTACAGGACAGCCCACTCATTTCACCTGGGCGGGGCATCGACACACTCTAACGAAAGAGTTGGCGAAACGTTTTCCTGTTCAAAAAGATTCAAGATGATTCAATCAACCTACAAGTAGATTCTGACCATTAAAATCCTGCTGAACACATTTATTGCTGATAAACGCAAACATTTTGAGAGTGAATGCAAAGTTTCTTGGGGGAACGCAATACATTTGTGAGAAAACACTAACGTTTTGAAAGCAATGAAAAGTTTCTTGAGAAATGTAGATAGTGACCATTAAAATCCTGCTGTAATTAATGTATATTCTGAACATACTGCTGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_07850412_07853905.mRNA True 1013 mRNA 0.50 2 7850180 7854017

Neighbor

gene id symbol gene type direction distance location
CI01000029_07836385_07847829 NAPRT coding downstream 2351 7836247 ~ 7847829 (-)
CI01000029_07820703_07833528 RHPN1 coding downstream 16095 7820675 ~ 7834085 (-)
CI01000029_07810274_07813211 HLX1, HLX coding downstream 36969 7809978 ~ 7813211 (-)
CI01000029_07615776_07640353 MIA3 coding downstream 209827 7615200 ~ 7640353 (-)
CI01000029_07592969_07600728 BROX coding downstream 249452 7591057 ~ 7600728 (-)
CI01000029_07946659_07953611 TSTA3 coding upstream 92385 7946402 ~ 7953611 (-)
CI01000029_08041274_08048935 NA coding upstream 186974 8040747 ~ 8049427 (-)
CI01000029_08083189_08089291 TBC1D7 coding upstream 228740 8082757 ~ 8089291 (-)
CI01000029_08092122_08094899 NA coding upstream 237650 8091667 ~ 8094899 (-)
CI01000029_08100383_08125091 NA coding upstream 245871 8099888 ~ 8125091 (-)
G156661 NA non-coding downstream 120975 7728966 ~ 7729205 (-)
G156659 NA non-coding downstream 131143 7718713 ~ 7719037 (-)
G156628 NA non-coding downstream 151304 7641036 ~ 7698876 (-)
G156633 NA non-coding downstream 196439 7643283 ~ 7653741 (-)
G156736 NA non-coding upstream 75742 7929759 ~ 7930343 (-)
G156718 NA non-coding upstream 366373 8220390 ~ 8226568 (-)
CI01000029_08237701_08245368 FDFT1 non-coding upstream 382178 8236195 ~ 8245368 (-)
G156850 NA non-coding upstream 413383 8267400 ~ 8267662 (-)
G156495 NA other downstream 480633 7365007 ~ 7371921 (-)
G156542 NA other downstream 679229 7170367 ~ 7170951 (-)
G154415 NA other downstream 2862755 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 3372968 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 4142928 3698572 ~ 3707883 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018480 si:ch1073-287p18.1 coding NC_007131.7 CM002904.2 52332972 ~ 52338810 (-)