CI01000029_08229070_08234969 (CTSBB)


Basic Information

Item Value
gene id CI01000029_08229070_08234969
gene name CTSBB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8228965 ~ 8234969 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_08229070_08234969.mRNA
ATGTCGCGTCTCTGTTTCCTGTGTCTGTTCGCTCTGCTGTCCGTCACCTGTGGCCACCTGCAGCTCTCCGCAGGGTCACATGACATGGTCAACATCATCAATATGGCCAAGACCACATGGACGGCGGGTGTGAATTTCCAGAACGTGAAGGACGGGTATCTGAAGTCTCTCTGTGGGACGCTGCTGAAGGGCCGCCGACTGCCTGATACGGTGAAACACGCCACCAACGTGAAGCTTCCGGACAGTTTCGACCCGCGGTCCGAGTGGCCGTACTGCAAGAGCCTGGGTCAGATCCGGGATCAGGGGAACTGCGGGTCCTGCTGGGCGTTCGGGGCGGCCGAGGCCATCTCTGACCGCATCTGCATCCACAGCAAAGGAAACGTGTCGGTGGAGATCTCCGCTGAAGACCTGCTGTCCTGCTGCGATCAGTGCGGCTTCGGGTGTTCTGGAGGTTATCCGGCAGAAGCGTGGGACTACTGGACTAAATCCGGCCTGGTGACCGGAGGACTTTATGGCTCCAATGAGGGTTGCAGACCCTACACCATCCCGCCCTGTGAGCATCATGTGAACGGCACCCGGCCGCCGTGTTCAGGTGAGCAGGACACACCGGAGTGTAACGCGGCCTGTATCCCGCAGTACAGCGTCCCCTACAAACAGGACAAACACTTCGGCTATAAAGCGTACAACCTCCCGTCGGACCAGCAGCAGATCATGACTGAACTGTACAACAACGGTCCGGTGGAAGCGGCCTTCACCGTCTATGAGGACTTCCTGCTGTACAAGACGGGCGTTTACCAGCATGTGACCGGATCCGAACTGGGCGGCCATGCTGTGAAGATCCTGGGCTGGGGAGAAGAGAAGGGAACGCCGTACTGGCTGGTGGCCAACTCCTGGAACTCCGACTGGGGCGACAACGGTTATTTTAAGATCCTGAGAGGCCGTGATGAGTGTGGGATTGAGAGTGAGATGGTGGCTGGAGTTCCTCAGCTGTGAACCTTCATCACCGCGCTTTAACCTGGATAAACAGAAATATATCTGAATCTGTGTCTCATTGTCATGGTTAATGCATTCTAAAATAATATACAACAATTGATTAAA

Function

symbol description
ctsbb Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis and regulation of catalytic activity. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in diabetes mellitus. Orthologous to human CTSB (cathepsin B).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01363 CTSB; cathepsin B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_08229070_08234969.mRNA True 1098 mRNA 0.56 9 8228965 8234969

Neighbor

gene id symbol gene type direction distance location
CI01000029_08205518_08214627 NA coding downstream 14338 8205470 ~ 8214627 (-)
CI01000029_08185095_08190376 NA coding downstream 38589 8185029 ~ 8190376 (-)
CI01000029_08178470_08183999 PSMG4 coding downstream 44966 8178420 ~ 8183999 (-)
CI01000029_08100383_08125091 NA coding downstream 103874 8099888 ~ 8125091 (-)
CI01000029_08092122_08094899 NA coding downstream 134066 8091667 ~ 8094899 (-)
CI01000029_08237701_08245368 FDFT1 coding upstream 1948 8236195 ~ 8245368 (-)
CI01000029_08250264_08262665 GATA4 coding upstream 15280 8250249 ~ 8262665 (-)
CI01000029_08384203_08407906 NA coding upstream 148656 8382870 ~ 8407906 (-)
CI01000029_08463083_08479077 NA coding upstream 228023 8462992 ~ 8479190 (-)
CI01000029_08568672_08576837 SLC25A29 coding upstream 332062 8566372 ~ 8577143 (-)
G156718 NA non-coding downstream 2397 8220390 ~ 8226568 (-)
CI01000029_08041274_08048935 NA non-coding downstream 181868 8040747 ~ 8049427 (-)
G156736 NA non-coding downstream 298622 7929759 ~ 7930343 (-)
G156661 NA non-coding downstream 499760 7728966 ~ 7729205 (-)
G156659 NA non-coding downstream 509928 7718713 ~ 7719037 (-)
G156850 NA non-coding upstream 32431 8267400 ~ 8267662 (-)
G156851 NA non-coding upstream 35783 8270752 ~ 8271021 (-)
G156852 NA non-coding upstream 36480 8271449 ~ 8271686 (-)
G156854 NA non-coding upstream 38302 8273271 ~ 8273498 (-)
G156495 NA other downstream 859418 7365007 ~ 7371921 (-)
G156542 NA other downstream 1058014 7170367 ~ 7170951 (-)
G154415 NA other downstream 3241540 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 3751753 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 4521713 3698572 ~ 3707883 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location