CI01000029_08568672_08576837 (SLC25A29)


Basic Information

Item Value
gene id CI01000029_08568672_08576837
gene name SLC25A29
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8566372 ~ 8577143 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_08568672_08576837.mRNA
ACACACCTCCTCGCCGACACCCGTCCATCCATCAGAACCCTGTACACAAATAGACAGTGATCCCAGCAGGTGGTAGTCAAGCTAGTAGGTGAAATTTTCCACTACGACCTGATCAGTGACTTACAGTTGGCGCAGAGCTCGTCCCGACAGCCGAGTTTCTGCTACGCTTCTGCTGCAAACTTACGCGCATCTGATCGCAGGACAGGCCTGAGCAACGAACCAGCTCTGTCTGCTCGACCGAACCCGAGTTACCGCTTCAAAACAGGCTTGAGCTCATCTAAAGGGAAGGTTTCTGTTGAAGCAGTGATGGACTTCCTTGCTGGCTGTTTAGGAGCTGCCTTTGAAAGAATAGAATGTTACATTGTGACTGATTTACTGTTACTGATTGATTGTGATGTTCTAAATTTGGTTACAATGTCATCGTTCTTCTGTGAGGTGGTTCGACTTCAGGTCCAGAGTGTGGATAAACCCCTTTACCGAGGAACTTATCACTGTTTTCAATCCATCATACGTCAAGAGTCAATGTTTGGCCTTTATAAAGGCATTGGTTCCCCCATGATGGGCCTGACGTTCATCAACGCCATCGTCTTCGGCGTTCAGGGCAACACCATGCGCATGCTGGGCGAAGATACGCCCCTGAACCAGTTCCTGGCCGGAGCGGCGGCCGGCGCCATCCAGTGTGTGATCTGCTGCCCGATGGAGCTGGCCAAGACCCGCATGCAGATGCAGGGAACAGGCGAGAAGAAGTCGTCCTCTCGGAAGGTCTACAAAAACTCGCTGGACTGCCTGGCGCGCATCTACCAGCGCGAGGGTGTGCGCGGCGTCAACCGAGGCATGGTCACGACTCTGATCCGAGAGACGCCGGGCTTCGGCGTTTACTTCCTCGCGTACGACCTCCTGACGCGCTCGCTGGGTTGCGAGCCGGAGGACCCGTACATGATTCCCAAGCTGCTGTTCGCCGGCGGCATGTCGGGAATCGCGTCCTGGCTTTCGACGTACCCCGTGGACGTGATAAAGTCTCGGCTGCAGGCCGACGGAGTGGGCGGGAAGTACCAGTACAGCAGCATCATGGACTGCACCAGGAAGAGCATCCAGCGTGAAGGCTGGCGAGTTTTCACGCGCGGACTTACTTCCACTCTCCTCCGGGCTTTTCCGGTCAACGCCGCCACGTTCGCTACGGTCACCCTCTTCCTTTTGTACGTACGCTCGGACGAAGCTCCTAAAGATTGCGAAACGGCTCCTCATCACGCGCCGTTGCAGCAACAAGCGCAACCGTCCAGCCTGTGAGTAACCTCGTCTTTGACGTAGTATAGCACTTCCCGAATTACGTTACTAATCAAACAGTTGCTGTGCAGTGAGCACATCTGGAATTGCACAACCTTTCTTTCTTTCTTTCTATCTGTACAATGACTTGATTTGTAAATATATTTTTTTATATTCAATGGTCAAGCGCGTTCCTTGTTTCTGCCTTACAAGAACAGCTGAAAGTAAGAATCCGACGTATGAAAGTAAGAATTTGCATGTTGATGTATTCAACAGCTGTTACTGTTGGCTCCCTTGGTTTTTACCTGGCAGAACTAGAAAAACTTGCTTTGAAGTTGCAAATTTTTGCTACACTGAAGAGAAACGAGTGTCTAAACAAATCCTCCCAAACCCTATTTATTACAATCATCAACTTTATTCTGGGGGGACGCCATTCTTTAAAAGCAAGGCTGTGATGTGTAGACATATAGTCTTATAGGTCATTTTGGTCCACTGAAAAGAATTTTTGTCAACTTTCATGGGTCATTCCGTGTCAACTCAACCAGAGGTCCTCGGCTCAATATTTTTTATGTAGAAAAACAAACATAAATAGCGATGAAAGCCAAAATAATAAATGTCACAGATGTGTATTTACTGAGTAATCCACTATTTTGTAGAGGAGAGTCAAAATGACCATTTTCATCTGAGATTTGGAGTCAAATTAGAGGGGTGTAAAAATGACTTTAGAAAGATGGAGCATCATTATTTTATTTTTACACAGAGATTGGTAGATCTATTAGTAAAATCTGTTGACTTTATCAATCTTTGTTTCATTATATGCCAACAGTGACAGCTCAAAAATGGCCTTTCGATCACTGAAAATGGGAAAAAAATCAACAATTTGAACATGGAGCTGCTTTGAGATCCTCATATCTTTTGGACTGAACTATATAGGGCCTTGAAAATGAAGATTTCAAAAGAAAAGTTTATTAAGAACCAGAATCTAAAAGGATATTAAGATATCTTGAACACTTTTAGAGTTAACTTGAGGCAAAGAAACACAAGAAGTGCTTTTGAGCTGTCACTGTTGGCATATAATGAAACAAAGATTGATAAAGTCAACAGATTTTACTAATAGATCTACCAATCTCTGTGTAAAAATAAAATAATGATGCTCCATCTTTATAAAGTCATTTTTACACTCCTCTAATTTGACTCCAAATCTCAGGTGAAAATTGTCATTTTGATCCTCCTCTACAAAATAGTGGATTACTCAGAAAATACACATCTGAGACATTTAATATTTTGCCTCTCATCACTATTTATGTCTGTCTTTCTTCAGGGAAAAAATTAACAAAATCAAAAATTTGAGCGGGGGAAGTTTCTGAAAATTGACACGGAATGACCCAAATGTGATTCTGGCACTAATTTAGTCTTTATTATGTTTTTACCACCTTTTACTGGAAGCTGCTGGTGAAATTGCCTGAAAGGTTGTGATATCTTGGCCTAGTGTTAAATTCATCTCATTTTGTGCAATGAATATGGTAGACACCAAATTATGTTTGCTAATCTTTCCGGAAAGTTTCTGTTTTCTACTTGAATTGTATTGGCTTGAATAATAATGATTTTTAAAGGACTCGTGTACAAAATAAGAGGACGATCCAAAGGTTTTTGTCCACAAATAAA
>TU178081
CACATCTGAGACATTTAATATTTTGCCTCTCATCACTATTTATGTCTGTCTTTCTTCAGGGAAAAAATTAACAAAATCAAAAATTTGAGCGGGGGAAGTTTCTGAAAATTGACACGGAATGACCCAAATGTGATTCTGGCACTAATTTAGTCTTTATTATGTTTTTACCACCTTTTACTGGAAGCTGCTGGTGAAATTGCCTGAAAGGTTGTGATATCTTGGCCTAGTGTTAAATTCATCTCATTTTGTGCAATGAATATGGTAGACACCAAATTATGTTTGCTAATCTTTCCGGAAAGTTTCTGTTTTCTACTTGAATTGTATTGGCTTGAATAATAATGATTTTTAAAGGACTCGTGTACAAAATAAGAGGACGATCCAAAGGTTTTTGTCCACAAATAAAATTCGGTCCCCTCAGTGAGTACTTTCCTCATCTCCTGCCTATAGTTTGTAATGTATGACCTACAAAATGAATGCAATATTTGCATGTTTTTCTGTAATGTATTAAATTGTTGGGATACAGGTTGTATCTGGCCCAGTGTAACTATCTATACTGCTATTAGAATGAAAAATGCCCTCATGTCTTTTGATTGACTGTAAGTTATACTGTAAGATCAATATATTTTATGTTTGTATATACCGAGGCTTGAATTTTCTCTGCATATCGAAAGATGTGTAAATAGAATTGCGTATGTTTGTGCTGACTAAAACATGCAGTTGGAAAAGAAGCGTATAGAACGGACAGAATGGGCTTTTAAAGAAATGCTGCTCTTTTTGTAACGGTTATGGATTGTATTAAATGTAAATATATAGTATTACATTAAAAAGGGAAGTTTAGACTGATGCATTGAAAACTAAATATGTGTGATTTACCTGTGAGAAATGTAAATAAATTGTATTTTATGGACTTGCAGAAGTACTGAAGTGATTTTAATTTGAATAGCTTTAGATTTTTCTTTTTCTAGTTTGTCGTTACTGCTGTTACTGCTGAAGAGATGGTCAAATGTTTGTCCTATTTTTGTATGAAATTCTGTGCTGCTCCCATTTGAAATGTGGTTGACC
>TU178080
AGTAAAATCTGTTGACTTTATCAATCTTTGTTTCATTATATGCCAACAGTGACAGCTCAAAAATGGCCTTTCGATCACTGAAAATGGGAAAAAAATCAACAATTTGAACATGGAGCTGCTTTGAGATCCTCATATCTTTTGGACTGAACTATATAGGGCCTTGAAAATGAAGATTTCAAAAGAAAAGTTTATTAAGAACCAGAATCTAAAAGGATATTAAGATATCTTGAACACTTTTAGAGTTAACTTGAGGCAAAGAAACACAAGAAGTGCTTTTGAGCTGTCACTGTTGGCA

Function

symbol description
slc25a29 Predicted to enable acyl carnitine transmembrane transporter activity. Predicted to be involved in acyl carnitine transport and amino acid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A29 (solute carrier family 25 member 29).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K15109 SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_08568672_08576837.mRNA False 2928 mRNA 0.44 4 8567031 8577143
TU178081 False 1062 lncRNA 0.33 1 8566372 8567433
TU178080 True 295 lncRNA 0.34 1 8567624 8567918

Neighbor

gene id symbol gene type direction distance location
CI01000029_08463083_08479077 NA coding downstream 87841 8462992 ~ 8479190 (-)
CI01000029_08384203_08407906 NA coding downstream 159125 8382870 ~ 8407906 (-)
CI01000029_08250264_08262665 GATA4 coding downstream 304366 8250249 ~ 8262665 (-)
CI01000029_08237701_08245368 FDFT1 coding downstream 321663 8236195 ~ 8245368 (-)
CI01000029_08229070_08234969 CTSBB coding downstream 332062 8228965 ~ 8234969 (-)
CI01000029_08606896_08609369 NA coding upstream 28363 8605506 ~ 8610176 (-)
CI01000029_08690880_08711534 PPP2R5CB, PPP2R5C.L, PPP2R5C coding upstream 113182 8690325 ~ 8711919 (-)
CI01000029_08713541_08717320 NA coding upstream 136045 8713188 ~ 8717320 (-)
CI01000029_08722756_08730839 HSP90AB1, HSP90AA1, HSP90AA1.1, HSP90AA1.2 coding upstream 145356 8722499 ~ 8731563 (-)
CI01000029_08732049_08738371 HSP90AA1, HSP90AA1.1 coding upstream 154689 8731832 ~ 8738371 (-)
G156919 NA non-coding downstream 49661 8517117 ~ 8517370 (-)
G156913 NA non-coding downstream 63852 8498258 ~ 8503179 (-)
G156727 NA non-coding downstream 185574 8380726 ~ 8381457 (-)
G156738 NA non-coding downstream 197739 8365066 ~ 8369292 (-)
G156831 NA non-coding upstream 183602 8760745 ~ 8761214 (-)
G156947 NA non-coding upstream 203620 8780763 ~ 8781076 (-)
G156949 NA non-coding upstream 205148 8782291 ~ 8782514 (-)
G156965 NA non-coding upstream 272982 8850125 ~ 8850686 (-)
G156983 NA non-coding upstream 388799 8965942 ~ 9012282 (-)
G156495 NA other downstream 1197484 7365007 ~ 7371921 (-)
G156542 NA other downstream 1396080 7170367 ~ 7170951 (-)
G154415 NA other downstream 3579606 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 4089819 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 4859779 3698572 ~ 3707883 (-)

Expression


Co-expression Network