G154572


Basic Information

Item Value
gene id G154572
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5571102 ~ 5571475 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU175496
AAAGACTCTGTCTCTGCTCCTCATAAACAAGCTGAATGGCAGAACGGCTCTCGATCAAACGGGTCATCTGCAATTATTTGTAACTTTGGCTGATTTCTTCTGCAACATTCGCATATTTAAAACTCTGCATCGGGTATAAACTGGTTCTGAGAAGATCTGTGATCACTGCGGTTGTCATGCAGAGAGAGGATGAGGAGGCTGAGAATGAAACTGGAAGTAACCAGGAATTCAGGAGCAGAGAAGAAGCAATTGACTCCAGCTGGTCCTGGGTAAGCTGCTGTCTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGCAGCGTGTTTATAGCACCAGTTCAAAGTCTGGACACACCTAATAGTAGTCATCAAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU175496 True 374 lncRNA 0.45 1 5571102 5571475

Neighbor

gene id symbol gene type direction distance location
CI01000029_05521742_05525648 FEZ2 coding upstream 45170 5521742 ~ 5525932 (+)
CI01000029_05512755_05521332 FEZ2 coding upstream 49770 5512755 ~ 5521332 (+)
CI01000029_05496375_05508658 WDR26, WDR26B, WDR26.S coding upstream 62356 5496375 ~ 5508746 (+)
CI01000029_05474130_05494930 ADCY3 coding upstream 75883 5473763 ~ 5495219 (+)
CI01000029_05461497_05468985 BATF coding upstream 101978 5461497 ~ 5470346 (+)
CI01000029_05577218_05577697 NA coding downstream 5743 5577218 ~ 5578537 (+)
CI01000029_05578983_05588654 NA coding downstream 7157 5578632 ~ 5589707 (+)
CI01000029_05591971_05597708 NA coding downstream 20496 5591971 ~ 5597842 (+)
CI01000029_05695252_05699826 NA coding downstream 121690 5693165 ~ 5699878 (+)
CI01000029_05772821_05785145 NA coding downstream 201346 5772821 ~ 5785381 (+)
G154564 NA non-coding upstream 116967 5453310 ~ 5454135 (+)
G154536 NA non-coding upstream 119811 5448056 ~ 5451291 (+)
G154620 NA non-coding upstream 143230 5427662 ~ 5427872 (+)
G154511 NA non-coding upstream 146882 5420112 ~ 5424220 (+)
G154560 NA non-coding upstream 212499 5358155 ~ 5358603 (+)
G154674 NA non-coding downstream 139634 5711109 ~ 5711373 (+)
G154675 NA non-coding downstream 148813 5720288 ~ 5721868 (+)
G154900 NA non-coding downstream 286234 5857709 ~ 5858056 (+)
G154905 NA non-coding downstream 288343 5859818 ~ 5861073 (+)
G154587 NA other upstream 299567 5271020 ~ 5271535 (+)
G153790 NA other upstream 830995 4733589 ~ 4740107 (+)
G153475 NA other upstream 2009098 3545125 ~ 3562004 (+)
G152451 NA other upstream 2808163 2761594 ~ 2762939 (+)
G155079 NA other downstream 711210 6282685 ~ 6288398 (+)
G155083 NA other downstream 860060 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 1334713 6905834 ~ 6908633 (+)
G155522 NA other downstream 2063358 7634833 ~ 7637834 (+)
G155627 NA other downstream 2360005 7931480 ~ 7932177 (+)

Expression


Co-expression Network