G154675


Basic Information

Item Value
gene id G154675
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 5720288 ~ 5721868 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU175605
CCTTCATCATCATCATCATCATCATCATCCATCATCATCATCAATAATCATTTCTGATTATTATCAATGTTGAAAACAGTTGTGCTGCTTCATATTTTTGTGGAAACCATGATATATTTTGTTTTTCAGGATTCTTTGATGAATAGAAAGTTTAAAAGAACAGCATTTATTTGAAATAGAAATCTTTTGTAACATTATAAATGTCTTTACTGCCACTTTTGATCAATTAAAGGGGTCTTGAATTTTTGTTGTTTTATTGTTTTATAATGTTTCCTGGGGTACACTTATAATGTTAGTATGCTTTTGACATTTTTCCTACCCTGATTTTAGTCCTCTGATTTGAACAATCTGTTTTAAGGGGCGTGTCTGCTGTGAGACTTCAGTGTAAACGCCCACTGCTGTGATTGGCTGATATCTTTTCATTTAAAATAGTGAAGTATTACTCTCTCTTTTAGCACGTTTTTACTATTACAGCTCTCGAGGTTAACTAATCGTGAAAAGTGTTGATTATAGCATTACATTTAGATCTGTGGCATTATATTTAGAACGTGGCATGAAAGGTTGCAGTGATGAACATTGTAGCCGATCACAGACATGTTGAGCACATGAAAGCAGTGATCTCGTCATTGCAACTCAATTTCTGCACACTAACAAATTCTTTCATCGTAACTAACAGTGGCAACGCAATATAACTAGAGATTTGTTGAATAAAACGGGAGTTTGGCGCGAGTCCAGAACTCAATCACTGATAAACTCGCGCTGTTTGATTGACAGCTCCAGCGATTGTAAAGGGAGCGTTCTTTGATCGCTTTCTTTATATAATTTAATCACTGTTTAAATAACAGATTATTTTCATCCTACTAAGAGAAACAACGTGAAGTTGAGCAGTTAGTCATTGGTTTGATTTACTGACACATAGACAAAGAACATCTGACTGTACATGAATCATTAATATCAGATCAGGCATTAGAATTTACACAGTTACTTACATGTTGTTGCATTACTGTCGAGTCCATATCGTAAAAGTCTATTGCAAAGCCTGCGCCGAAATGTGATTGATTTACCAAAGAATCCACATTGAAATACCGAATACTAATAAGTAAAGCTTAACTGAGACGTTCATATTGTTGAAAATTAATAACCACATTCCGAGCATTAAGTTCCTTTGAAAGGTAATGTTATTTTAGTCCATCCATTCATCCATCATCATCATTTTCGGTCCTTCATCATGATCATTCACCATCCATCCATCCATCCATCCATCCATCATCATTATTCATCCTTCATCATCATCCATTCTTCTTAGTCATCTGTCCTTCATCATCATCATCATCATCTATCCTTCATCCATCATCATCTGTCCTTCATCATCATCCATCCTTCATCATCATACATCCATCATCATCATCATCTGTCCTTCATCATCACCATCTTCATCTGTCCTTCATCATCATCCATCATCATAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175605 True 1467 lncRNA 0.35 2 5720288 5721868

Neighbor

gene id symbol gene type direction distance location
CI01000029_05695252_05699826 NA coding upstream 20410 5693165 ~ 5699878 (+)
CI01000029_05591971_05597708 NA coding upstream 122446 5591971 ~ 5597842 (+)
CI01000029_05578983_05588654 NA coding upstream 130581 5578632 ~ 5589707 (+)
CI01000029_05577218_05577697 NA coding upstream 141751 5577218 ~ 5578537 (+)
CI01000029_05521742_05525648 FEZ2 coding upstream 194356 5521742 ~ 5525932 (+)
CI01000029_05772821_05785145 NA coding downstream 50953 5772821 ~ 5785381 (+)
CI01000029_06015438_06024591 HADHA, HADHAA coding downstream 293570 6015438 ~ 6025083 (+)
CI01000029_06066859_06073942 NA coding downstream 344991 6066859 ~ 6073974 (+)
CI01000029_06076254_06083211 XKR5 coding downstream 354253 6076121 ~ 6084211 (+)
CI01000029_06086495_06092753 NA coding downstream 364627 6086495 ~ 6093859 (+)
G154674 NA non-coding upstream 8915 5711109 ~ 5711373 (+)
G154572 NA non-coding upstream 148813 5571102 ~ 5571475 (+)
G154564 NA non-coding upstream 266153 5453310 ~ 5454135 (+)
G154536 NA non-coding upstream 268997 5448056 ~ 5451291 (+)
G154620 NA non-coding upstream 292416 5427662 ~ 5427872 (+)
G154900 NA non-coding downstream 135841 5857709 ~ 5858056 (+)
G154905 NA non-coding downstream 137950 5859818 ~ 5861073 (+)
G154910 NA non-coding downstream 145307 5867175 ~ 5867387 (+)
G154912 NA non-coding downstream 147476 5869344 ~ 5869654 (+)
CI01000029_05461497_05468985 BATF other upstream 249942 5461497 ~ 5470346 (+)
G154587 NA other upstream 448753 5271020 ~ 5271535 (+)
G153790 NA other upstream 980181 4733589 ~ 4740107 (+)
G153475 NA other upstream 2158284 3545125 ~ 3562004 (+)
G152451 NA other upstream 2957349 2761594 ~ 2762939 (+)
G155079 NA other downstream 560817 6282685 ~ 6288398 (+)
G155083 NA other downstream 709667 6431535 ~ 6490294 (+)
CI01000029_06906861_06907157 NA other downstream 1184320 6905834 ~ 6908633 (+)
G155522 NA other downstream 1912965 7634833 ~ 7637834 (+)
G155627 NA other downstream 2209612 7931480 ~ 7932177 (+)

Expression


Co-expression Network