G156727


Basic Information

Item Value
gene id G156727
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8380726 ~ 8381457 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU177955
NNNNNACCCACTACAAGCGCTTTGTTGTGAAGATGTTCACATTTGTGGATCCAGCATCACTGGCTCCTCTGCAGGAAACTATCTTCATCCACTGTAGTACAGCGGTGTGCCATCCCTCTTCTGGCTCCTGTGAGCAAAGCTGCGCTAGGAAAAGAAGAGACACGCACGTCAAGACCATCTCTAGTGGGCAAACTGTGGTTTCTAGTGGAGAAGTTAACCTGGTCGAGTCTATTTAGTGTTTTAATAAACTGCATGAAACAATATTGGTGTCTTTTGGTATTGATTTCCAACTGAAGTAGGATGTTTCTTGACTGTCCTCCGTTTGCTTAAATATTTGCCAGTTGATAACCTGGTCCCCTGTTCATGTTCCACATGCTATCAAATTAAGGGTTGTTCGTTTGGGTCTTACTTGTGACTTTGGACTAATATACCTGCACATATTGATACTCAAGCATGCCTAAGTCCCTCTGAAGTCTGTCACTACTTGGCCAATTTTGTAATGCTATTTTGAAAGCTTTTTCCAGTCATACAGTATAGCATAATATCTGGAATAAAATCTGCATCAACCTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU177955 True 571 lncRNA 0.42 3 8380726 8381457

Neighbor

gene id symbol gene type direction distance location
CI01000029_08250264_08262665 GATA4 coding downstream 118061 8250249 ~ 8262665 (-)
CI01000029_08237701_08245368 FDFT1 coding downstream 135358 8236195 ~ 8245368 (-)
CI01000029_08229070_08234969 CTSBB coding downstream 145757 8228965 ~ 8234969 (-)
CI01000029_08205518_08214627 NA coding downstream 166099 8205470 ~ 8214627 (-)
CI01000029_08185095_08190376 NA coding downstream 190350 8185029 ~ 8190376 (-)
CI01000029_08384203_08407906 NA coding upstream 2168 8382870 ~ 8407906 (-)
CI01000029_08463083_08479077 NA coding upstream 81535 8462992 ~ 8479190 (-)
CI01000029_08568672_08576837 SLC25A29 coding upstream 185574 8566372 ~ 8577143 (-)
CI01000029_08606896_08609369 NA coding upstream 224049 8605506 ~ 8610176 (-)
CI01000029_08690880_08711534 PPP2R5CB, PPP2R5C.L, PPP2R5C coding upstream 308868 8690325 ~ 8711919 (-)
G156738 NA non-coding downstream 11434 8365066 ~ 8369292 (-)
G156902 NA non-coding downstream 16374 8364127 ~ 8364352 (-)
G156900 NA non-coding downstream 17504 8363011 ~ 8363222 (-)
G156899 NA non-coding downstream 17784 8362642 ~ 8362942 (-)
G156898 NA non-coding downstream 19328 8361155 ~ 8361398 (-)
G156913 NA non-coding upstream 116801 8498258 ~ 8503179 (-)
G156919 NA non-coding upstream 135660 8517117 ~ 8517370 (-)
G156831 NA non-coding upstream 379288 8760745 ~ 8761214 (-)
G156495 NA other downstream 1011179 7365007 ~ 7371921 (-)
G156542 NA other downstream 1209775 7170367 ~ 7170951 (-)
G154415 NA other downstream 3393301 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 3903514 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 4673474 3698572 ~ 3707883 (-)

Expression


Co-expression Network