G157043


Basic Information

Item Value
gene id G157043
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9307532 ~ 9308634 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU178307
CTCAGCTTCGAAACGCTACACGTGTGTCTTTCCTTCATCGAGTATAACGGGGTGATGATGATGTCACGAGATTCTGGGATTATAACACTGACACACTGAACCGGTTCCGAAGCTTCAGCGTTCAGAACCACCAGATCCTGTTTGTTTAGAAGCGACGAGGATTCTAAACAAACGCTGCGATGACACGTGACGTGAAAAGTCTAGCAGCGGGCGTCACTGGTGCATGATGGGAAGGCCTGACGTCAGCTGACACAGCAGGGAAACAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU178307 True 267 lncRNA 0.50 2 9307532 9308634

Neighbor

gene id symbol gene type direction distance location
CI01000029_09300363_09303399 NA coding downstream 4133 9300262 ~ 9303399 (-)
CI01000029_09266806_09267723 NA coding downstream 39796 9265396 ~ 9267736 (-)
CI01000029_09256349_09260500 NA coding downstream 45163 9255954 ~ 9262369 (-)
CI01000029_09241423_09246886 NA coding downstream 60646 9241294 ~ 9246886 (-)
CI01000029_09224569_09226329 NA coding downstream 81203 9224290 ~ 9226329 (-)
CI01000029_09362545_09363909 NA coding upstream 52832 9361466 ~ 9364306 (-)
CI01000029_09371783_09394715 PLCB4 coding upstream 63149 9371783 ~ 9395151 (-)
CI01000029_09399992_09440921 NA coding upstream 90979 9399613 ~ 9440921 (-)
G157028 NA non-coding downstream 62996 9244327 ~ 9244536 (-)
G157027 NA non-coding downstream 65455 9241829 ~ 9242077 (-)
G157026 NA non-coding downstream 103826 9203351 ~ 9203706 (-)
G157014 NA non-coding downstream 151870 9152396 ~ 9155662 (-)
G157013 NA non-coding downstream 185097 9122211 ~ 9122435 (-)
G157046 NA non-coding upstream 14279 9322913 ~ 9325470 (-)
G156495 NA other downstream 1937985 7365007 ~ 7371921 (-)
G156542 NA other downstream 2136581 7170367 ~ 7170951 (-)
G154415 NA other downstream 4320107 4986108 ~ 4990990 (-)
CI01000029_04460778_04463540 FKBP1B other downstream 4830320 4460159 ~ 4463540 (-)
CI01000029_03698769_03707177 NA other downstream 5600280 3698572 ~ 3707883 (-)

Expression


Co-expression Network