XLOC_008882 (cbln20)


Basic Information

Item Value
gene id XLOC_008882
gene name cbln20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 572195 ~ 576135 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00017547
GGTCCCTTTAGGTTTATACAAGATCTGAAATCAAACACTCGCTGCTTTATGCTCACACTGAAAGAGTTCGTTCAGAGTTTTTGCGTCTCTTTGTTGGTACAAGTCAACATGCAGTGTGATGTTTTGTGAACTCCAATCCAAGAAAGAGGACAGATAAGTGTCAGCTTCACCCAGCCATGGGAATATAATGACGTTCTGCAGGAGAAGAACAATACCTGCCCCATTTTCAGCACAGAAACGCACACAAAAGGCCCTGCCCATGCTCTGCAGGAGGAGGCATCTGTGCTGCCTTTATAGGCAGGACTACAGGATTTGGTGAGAACTCATTTTCCAGTCTTTCAGTtgagagacagcagcagaaatgAAAGcCGTTGTTCTCTTAAGCGTTTTGGGATGCGCACTTGCACAAGAAAGATTGTTTTCGTGGAGTGATCCGGGACAACCTATTCAGCCTGACCCAACAGATAACGCGTGTGTGACGGATGTGGCGTCCTGCGGCTGCTGTCTGATGCAGAAGCAGATGTGGAAGATGGAGAGTTTCTTCAACATGAGCTTAAATGAGCTGCAGCGTGGCCTGGACCGAGCTCACGCTGTGCTCAACAACATCCGAGTGAGTCGCAGTGCTTTCTCTGTGGCCCTGACTGACTCTCGCCTCTGCGTCGGCCCGAACCGTGAAGACTCTGTGCTGAAATATGGGAAGGTGTTCATTAATCTGGGCGAGGGCTACAACAGCAGCAGCGGCGTCTTCACCGCTCCGCGCTCTGGAGTCTACAGCCTGGCCCTGACGCTGTACAGTGACTCTGGGTCTGCGGGGTCCGTGCTGGCGGCCTGCGCTCGACTGCGGCTGAACGGACGCACCATCGCCTCCCCGACCGAAAAGAACACTCAGGACCAGGAGGACAGCGCTAGCGCTCTGTTAGCCGTGCAGATGCTTGCCGGAGACCATCTCGATGTTTCTCTGCCGGCCGGATGCTTTCTGTGTGACGATAACAACCACTACAACACCTTCACCGGCTTCCTGCTCTACTCTACTGATTAACACGAGGAGAACTGCTGTCTGTCGCACATCATGCACAACTACAGATGAAGATATGATCAGTTTAAGGCACTCGAGAAGGGGAAGTGTTCTGgaattaaaaatgcttttctttgttTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-111109-2 No description available

Ensembl:

ensembl_id ENSDARG00000087476

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00017547 True 1157 mRNA 0.51 4 572195 576135

Neighbor

gene id symbol gene type direction distance location
XLOC_008881 cbln18 coding downstream 3550 556956 ~ 568645 (-)
XLOC_008880 tagln coding downstream 21014 543744 ~ 551181 (-)
XLOC_008879 nudt8 coding downstream 66185 499848 ~ 506010 (-)
XLOC_008878 mfrp coding downstream 94972 464229 ~ 477223 (-)
XLOC_008877 CABZ01033205.1 coding downstream 109412 454349 ~ 462783 (-)
XLOC_008883 si:ch73-144d13.5 coding upstream 10470 586605 ~ 604353 (-)
XLOC_008884 si:ch73-144d13.7 coding upstream 35094 611229 ~ 617797 (-)
XLOC_008885 NA coding upstream 46574 622709 ~ 633408 (-)
XLOC_008886 si:ch211-210b2.4 coding upstream 71719 647854 ~ 660394 (-)
XLOC_008887 si:ch211-210b2.2 coding upstream 89021 665156 ~ 669476 (-)
XLOC_008874 NA non-coding downstream 142548 428419 ~ 429647 (-)
XLOC_008873 CABZ01056628.1 non-coding downstream 146439 425695 ~ 425756 (-)
XLOC_008871 NA non-coding downstream 194008 374380 ~ 378187 (-)
XLOC_008870 FP102887.1 non-coding downstream 222628 349451 ~ 349567 (-)
XLOC_008869 BX640522.2 non-coding downstream 281688 282731 ~ 290507 (-)
XLOC_008893 NA non-coding upstream 236961 813096 ~ 815019 (-)
XLOC_008894 NA non-coding upstream 242056 818191 ~ 848462 (-)
XLOC_008895 NA non-coding upstream 260880 837015 ~ 848792 (-)
XLOC_008896 NA non-coding upstream 293826 869961 ~ 909037 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_00114969_00116445 CBLN20 coding CI01000072 null 114931 ~ 116687 (+)