CI01000033_00131331_00201065 (SDK2, SDK2B)


Basic Information

Item Value
gene id CI01000033_00131331_00201065
gene name SDK2, SDK2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 131331 ~ 201319 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000033_00131331_00201065.mRNA
ATGACTGTGGTGGCACGGTTGGCGAGCGCTATGCACTCAGGGTGGGATGATGTCCCACCCTACTTCAAGATGGAGCCGGTGGCAACCCAGATCCACCTGGAAGGAAACCGGGTGGTTCTCACTTGCATGGCTGAGGGCAGCTGGCCCCTGGAGTTCAAATGGCTTTACAATGGGACTGAGCTGACACGTTTCTCCCTGGAGTACAGTCAAGACAATAGGAGCGGTTTCCGACGCAGTCCACAGAGCATTTCTAAAAGATCCCTGGTGACCGAAACTTCCCAGCAGTCTCCTACCTCAGACACTGTATGTAATTTCCTCACTGGATCGCTCCCATGCAGGCTTCTACAGATGCATCGTCAGGAACAGGGTGGGAGCTCTGATGCAGAGGAGTTCGCAAGTCCAGACATGGAAGGCTTTGTGGAGGGTGAACGGTCTCAGGTGGTGTCCCAAGGGGAGGCGGCATTGATCTTCCCGCCACAAATCCACAGCTTCCCGCGGCCTGGGATCACATGGTTTAGAGACGGACGCAAGATCCCCCCCAGCAGCCGCATAGCCCTTACGCTGGACAACACCCTTGTCATCCTCTCCGCCGTGGCCCCAGATGCAGGTCGGTACTACGCCCAGGCCGTCAACGACAAGAACGGAGAGAACAAGACCAGCCAGCCCGTCGTCCTGAATGTAGAAAACATTGGCGGCCCAGCAGACCCCATCGCTCCATCTATTATAATCCCACCGAAGAACACCAGTGTGATGGTGGGCACATTTGAAGTCACTCTGGAGTGTGTGGCCAATGCAAGGCCAATCCTGTCTCTCATTCCCCGCTTGTGTTTATCCGTATTTCTCTCTCGCTTTACCTCCAGGCCTCTCATTAAGCTCAGCATTACATGGCGGAAAAATGGAGTGCTGGTAAATCGAGGCCTCCGGGACTTTGGCCGCCGTCTGACCATCAGTGGTCCGTTGGTCAGTGACAGTGGATACTATGAATGTGAAGCCTCCCTCCGGAGCAGTAGCGCCCCCTCAGTCAGCGCCGGAGCATATCTGCACGTGCTGGGTAACCTCACATTCCTCCTTCCTGTTAAACGTTATGTCAGAGATGTGTTTAAAATAAAATACATCTTTGAACAAAACCTAGATATCTGGCGGACTGAAAGAAGTTCTGCTTCTACTGAAATGCATGATGAACATCCTCAGTTTGTGAAGGAGCCCGACAGACATATTACTGCTGAGATGGAGAAGGTGGTAGACATCCCATGCCAAGCTCGTGTTCCTCAGCCAGATATAGTGTGGTATAAGGATGCTGTACCCATAAGCCCCGTGAAGACACCTCGTTACAGAGTCCTGGTGGGCGGCAGTCTGCAGATAAACGGACTGCTCCCGGACGACACTGGAATGTTCCAGTGTTTCGCTCGCAACTTAGCGGGAGAGATCCAGACGAACACGTACCTTGCTGTCACCAGTATCGCCCCAAACATCACGGCCGGCCCCTCTGACAGCGCCGTGATTGATGGCATGTCTATAATTTTACACTGTGAGACCTCAGGGGCCCCGCGGCCCGCAATCACATGGCAGAAAGCTGAACGGGTTCTGGCAAGCGGCTCCGTGCAGTTGCCACGTTTCACTTTGCTGGAGTCTGGCAGTCTTCTGATCAGCCCCTCTCACCTGTCTGACGCTGGATCCTACACCTGCATGGCCAGTAACTCCCGTGGGATTGACGAAGCCTCGGCCGATCTGGTGGTGTGGGCTCGAACGCGAATCACTAATCCACCTCAGGACCAGAGCGTGATCAAGGGCACCAAAGCAGCCATGACCTGCGGTGTGACCCATGACCCCAGCGTTACAGTCAGGCACATCTGGGAAAAAGGAGGAACAGCTATTGACGTGAAGTCGAGTCCCCGCTTGCGTCTCGACTCCAACGGCACCCTGCACATATCTCAGACCTGGTCGGGGGACATTGGGACCTACACCTGTAAGGTCACATCTGTGGGAGGCAACGATTCTCGCAGCGCTCACCTAAGAGTCAGGCAGTTGCCTCATGCTCCAGAGAACCTCATCGCCACCCTCAGCAGCTCTGAGAGAAGAACCATCAACCTGACCTGGGCCCAAGCCTTTGACGGGAACAGCCCGCTCATCCGTTACATCCTGGAGGTGTCAGAGAACAACGCACCTTGGACTGTGCTCTTGGCCAACATCGATCCAGAAGCCGCCAGCGTGATCGTGGGGGGCCTCATCCCGGCACGTTCTTACCAGTTCCGCCTGTGTGCCGTCAACGATGTGGGGAAGGGCCAGTTCAGCAGAGAGACGGCACGACAGACTACTAAGAAAACTGTTGTTCCCTTACTTCCAGAAGTGAATAATACAGCCATTCACATTGGAGCTAGTGATTTTTCAGTACAACGCTTTCCATCCTACGCATTACAAAGAGCACCAAGTGACTCGCGCCTTCAAACGTGCTCCGATCCCACAGGAACGCCTGTGACGTCTAAGACGCACGCGCACATCAGAAGACATTCTCTCTCAGCGCTTTCAGACGGGGGAACCCGCAGAGGTGGGGGTGACATAACAGCCCCGCGCCGCTCAAGGATCCGCGCCTATTTCTTTGATCCTAAAACACTGCGCTTTATCTCAGCCACAGAACTGCGGCTCTCACGCAGGAGATATCAAGATGTCAAGTTAAATAGATTTAAGAGGAGTCTTGCTGGATTTTTTTACTCTGTGGCATTAGCCAATTTTGGCTGTGGCGTCTTTGATCATCTCACGCCGAGAGAAACCACGTATCTCCAGCGCCCCTGCTCGAAATGCAGTCAGTGCTCAGATGGCTTCCGAGATGGAAAATCAAAGTTCTTAATCGTTATTCGTCGGGAACTGGTGCATTACAATGACACTCGGATACAAGTCCCATTACCCGAGGAGCCCCCCAGCGCCCCTCCTCAGACAGTGATAGCCAGTGGCCGAACCAACCAGTCCATCATGATCCAGTGGCAGCCGCCCCCTGAGAGCCACCAGAACGGGCCGCTTCAAGGCTACATCATCAGGTACTGTCTGTCTGGATTACCGGTGGACTGTCAGATGAAGAACATCACCAACCCAGACCAAACAAATCTTCTGCTGGAGGACCTCATCATTTGGACAAACTACGAGATTGAGGTTGCCGCTTATAACGGGGCAGGCCAGGGCGTCTACAGCCCCAAGGTCACGGAATGGACCCTGCAAGGCGTGCCCACGGTCCCACCTGGGAATGTCCAGGCGGAAGCTGTCAACTCCACCACAGTCCGTTTCACATGGAGCGCCCCGAGTCCACAGTTCATCAATGGCATCAACCAGGGATACAAGCTGTTGGCATGGGAACCAGGCCACGAGGAAGATGTTACCTTGGTTACTGTGAGACCCAATTTTCAAGACAGTGTTCATGTAGGTTACATTACCGGACTGAAAAAGTTCACAGAGTACTTCACCTGCGTGCTGTGCTTCACTACGCCAGGAGATGGTCCTCGCAGCACTCCGCAGCGCATACGCACCCACGAAGACACCCCTGGACCTGTAGGTCACCTGAGCTTCACAGAAATCCTGGACACATCTCTCAAAGTGAGCTGGAAGGATCCGCCTGAGAAGAACGGTATCCTCACAGGGTATCGCATTTCCTGGGAGGAATTCAACAGGACAAACACGCGAGTCACGCATTACCTGCCGAACATGACGCAGGAGTACCGGGTCACTGGTTTGACTGCACTCACTACCTATACCATTCAGGTGGCCGGTATGACCTCCAAAGGTCAAGGTCAGCTGTCGTCCTCCACCATTTCCTCTGGTGTGCCACCAGAGATGCCTGGACCTCCTACCAACATCGCCATCTCCAACATCAGCCCGCGTTCGGTTACCCTGCAGTTCAAACCGGGCTATGATGGCAAAACATCCATCTCACGCTGGCTGGTAGAGGCTCAGATCGGTGTTATTGGAGAAAATGAGGAGTGGGTCATGGTCCATCAGCTGGCCAATGAGCCTGATGCACGATCCCTTGAGGTCCAGGGCCTGAACCCCTACACGTACTACAGGTCCATCCACTGCGACAATGAATTCTGGAATATATTTATATATAATGCCTGTTGGCTATGTTATAACTTGCCATCTGATTGTAGGTTTCGAATGAGGCAGGTTAATATAGTAGGCACGAGCCCACCCAGCCAACCATCCAGGAAGATCCAGACCCTACAGGCTCCTCCTGACATCGCCCCAGCCAACATCACTCTCCGCACAGCCAGCGAGACCAGCTTGTGGCTCAGATGGGTGCCGCTGCCAGAGTGGGAATACAACGGCAATCCAGAGCTGGTGGGCTACAGGGTGCAGTACTCACGCCTGGGCTCAAAGGTTGGGGTCCTGTCCCACATCATTCCTGACAGGCAAGAGAGAGAGTTTACCATTGAGGACCTGGAGGAGTGGACAGAATACGAGGTCAAAGTGCAGGCGTTTAATGGCATCGGGCCAGGACCGTGGAGCCAGCCAGTTCACGGGAGAACCAGAGAGTCAGTCCCCTCCAGTGGCCCTGCAAATGTTTCAGCTTTTGCTACCACCTCCAGCAGCATCTTGGTCCGCTGGGGTGACGTGCCAGAAACTGACCGCAATGGACTAATTCTGGGCTATAAGGTGGTGTACAAGGAGAAGGATGCAGAGTCAGCTCTGCATTTCTGGATGGTGGAGGGAAATACCACTTACAGTGTCCAGCTCACTGGTCTTGGGAAGTATGTGCTTTATGAGATCCAAGTTCTAGCATTTACCCGTATAGGAGATGGCATGCCGAGTTCTCCGCCCATCTTTGAGCGCACACTTGATGATGTACCTGGGCCTCCAGTCGGGATACTTTTCCCTGAAGTTAGGACTTCCTCAGTGAGACTGATCTGGCAGCCCCCTGCCCTGCCAAATGGTATCATCCTTGCCTATCAGATTGCTTACCGGAGAAACTCCTCCAGTATTACCTCCGCCATCGTCGATGTGCTCAACCCAAGTGCGCGACAGTATACAGCAACTGGACTGAAACCAGAGAGTGTTTACGTGTTCCGCCTCACAGCCCAGACTCGAAAGGGCTGGGGAGAAGCGGCTGAAGCATTGGTGGTCACTACAGAAAAGAGAGCACGCCCACAGCCTACAAGTCGTCCTGTTGTGCCTCAGGAGGAGGTCCAGGCCCGCAGTGTGCTGTTGTCATGGGAACCAGGCAGCGACGGTCTGTCGCCCATACGATACTACACCGTCCAGTACAGAGAGCTACCCGACAGCAACTGGACTGTCCACTCGGCATCAGTCAACCATGAGGCCACCTCTTACATCATAAACAGGCTCAAACCTTTCACTTCCTACCAGTTCAGAGTGAAAGCTACTAATGATATTGGAGACAGCGAGTACAGCGAGGAAAGCGAGGCAATCACCACTCTACAGGACGCTCCCGACAAAGCTCCAACAATCCTCTCTGTGACGCCACACACCACCACATCTGTGCTAGTCCGCTGGAAGCCACCCCCTGAGGAGGAGATCAATGGCATTTTGCTTGGTTTTCGAGTACGCTACAGAGAACTGCGTTACGACCGCCTACGCAGTTTCACAGTGCGCACAGTGAACAGCCCATCAGCCAACTGGGCCGAGCTCACAGCCCCCTACAGTGTGAGGAACCTGACCGAATCCTCACTTACCCAATACGAGCTGGACAATCTGAATAAACACAAGCGCTACGAGATCAGACTAAGCGTGTATAATGCGGTAGGGGAGGGGCCCACCAGCTCGCCACAGGAAGTGTTCGTGGGAGAAGCTGTGCCCACCGCTCCACCTCAGAATGTCGCTATCCAGTCCTCAACAGCGACTCAGCTTGATGTCACATGGGACCCTCCTCCAGTGGAGGCACAAAATGGAGATATTCAAGGCTATAAGATTTATTATTGGGAGTTTCAGCTGCAGAATGAGACTGAGCGACTCCGTACTCTCTTCCTGCCGGAGCTGAGTGTGAAGCTGAAGAACTTGACCGGCTACACCACTTACATGATCAGCGTGGCTGCCTTCAACGCGGCAGGGGATGGTCCGCGTTCACTGCCCACCAGAGGGCGCACTCAGCAAGCAGCTCCAAGCGCTCCCAGTTTTATCCACTTTAGTGAACTCACCACTACCTCGGTCAACATGTCCTGGGGTGAGCCCAAGCAGCCGAATGGCATCGTGGAGGGATACCGCGTGGTCTACGAGCCCTGCACGCCTGTGGATGGTGTCAGTAAGATTGTCACAGTGGATGTGAAGGGCAGTGCCCCCTTGTGGATGAAAATCAAGGATCTGGCAGACGGAGTGACCTACAACTTCCGCATCCGTGCTAAAACTCTTACCTATGGACCAGAGGTCGAGGCCAACATCACCACTGGCCCCGGAGAAGGTGCTCCAGGGCCTCCGGGTGAGCCGTTTATCTCTCGTTATGGCTCGGCACTCACTCTCCACTGGTCCAGCGGTGACCCCGGCCGTGCTCCCATCACGCGCTATGTTATAGAGGCAAGACCATCTGATGAAGGACTGTGGGATATTCTAATCAAAGACATCCCTAAAGAGGTGACGTCGTACACTCTTAACCTGGATACCCTCAGAGAAGGAGTCACCTATGACTTCCGTGTCATTGCGGTGAATGATTATGGCTACGGTTCCCCGAGTGCCCCTTCTCCTTCAATATCAGCCCAAAAGGTCTCCCCCTTTTATGAGGAATGGTGGTTTCTGGTGGTTATTGCTCTCGTGGGCCTTATTTTCATCCTTCTGCTCATCTTCATCCTCATCATACGAGGTCAGAGCAAAAAATACACCAAGAAAACAGACTCAGGTGCCCACTCAAACTGCACATCTCTGCCCCTATCCCATGGAGAGATGGTGCGGCTGGATGAAGGACGCTTTCCTGCCCTGGAGCTCAACAACCGTCGACTCTCTGTCAAAAATTCCTTCTGCCGTAAGAATGGAATCTACACCCGATCTCCACCACGACCCAGTCCCGGCAGCCTGCACTACTCTGATGAAGATGTCAGCATCAAGTACAATGACTTGGTCCCAGCTGAGAGCAGCAGCCTGACCGAGAAGCCCTCAGAAGTGTCTGACTCACAGGGCAGTGACAGCGAGTACGAGTTGGATCCAAACCGGCAGAAGACCCACTCCTTCGTCAACCACTACATCAGTGACCCCACCTACTATAATTCCTGGCGCCGGCAACAGAAGGGCGTCTCTCGGCCTCCGGCGTATGGCTACGCCCAACCCGACACGGTGGCGGAACAGGAGTCCCGCCCCCACCCGCCTCCGCTGCCACCGTTACCACCTCTGCTACCCCACAGCAATCCCTCCCCACAGCCCCAGGGCCAGGGCACCTTGTTCAGGCCCAAGGGGAGCCGGACTCCCACCCCGTCACTGCTGTCCTCTGACAACCACAGCCAGCACACCCTGTACAGGCCCCCTAGCAGCCTGGGCACCTCCACCCAGGTCCCGGCCACAGGATTCTCCTCATTTGTTTGATACAAGACTCTCATTCCAATGACAACACGCCTGGGAGGGACTCCTGCAGTATTATTGGTCTGTTCTGTATTTTTTCCCCCCTTGCTGCACCTTGTCGGACATCAAGAGCTGCTTTTGGATTTTATTGACCGGGTGTGCAGGTGTATTGTGGGTTTATATGTGCGTGCAAGAGCATTGAAAAACAGACAATCATTCTGAAGGGAATCGGTTTGTTGATTGTATATTTTAAAATATATTCACTTCATCCTTCACTA

Function

symbol description
sdk2b Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synapse. Is expressed in ciliary marginal zone; retinal ganglion cell layer; retinal inner nuclear layer; and retinal outer nuclear layer. Orthologous to human SDK2 (sidekick cell adhesion molecule 2).
sdk2 Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina morphogenesis in camera-type eye; and synapse assembly. Predicted to be located in plasma membrane. Predicted to be active in synapse.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K16353 SDK; protein sidekick

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000033_00131331_00201065.mRNA True 7760 mRNA 0.54 49 131331 201319

Neighbor

gene id symbol gene type direction distance location
CI01000033_00039492_00046280 NA coding upstream 84425 39160 ~ 46906 (+)
CI01000033_00000373_00008090 NA coding upstream 123168 373 ~ 8163 (+)
CI01000033_00227674_00228681 CDC42EP4A coding downstream 26355 227674 ~ 229350 (+)
CI01000033_00263817_00267075 PMP22A coding downstream 62447 263766 ~ 267428 (+)
CI01000033_00425156_00470606 DNM2A, DNM2 coding downstream 223837 425156 ~ 470676 (+)
CI01000033_00497624_00498442 NA coding downstream 296305 497624 ~ 498479 (+)
CI01000033_00523275_00559791 PPAP2D coding downstream 321956 523275 ~ 559791 (+)
G167766 NA non-coding downstream 15878 217197 ~ 278323 (+)
G167741 NA non-coding downstream 41984 243303 ~ 298391 (+)
G167815 NA non-coding downstream 47875 249194 ~ 249508 (+)
G167749 NA non-coding downstream 97178 298497 ~ 299111 (+)
G167837 NA non-coding downstream 118813 320132 ~ 320515 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location