CI01000034_01652735_01654473 (HOXB4, HOXB4A, HOXB4AB, HOXB4AA)


Basic Information

Item Value
gene id CI01000034_01652735_01654473
gene name HOXB4, HOXB4A, HOXB4AB, HOXB4AA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1652277 ~ 1655606 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01652735_01654473.mRNA
AGACGCACAGTCACAAATTCGTATCTAGGGGAGTATGTAGTTGATGTATAGGCTACATTCAACTTCAACGGGCAAAGAAGATGACATTTTAACTGTTGGTTTGTCATTGTTATTAATATTACGACAGTTTGGTAGTGAAATATTAGCAGGAACGAAAGTTTTTTTTTTTTTTTTTCCTTAGCTACTACAATTTTTTTCTGTAAATGTAAGATTTAAAGGGCGTTCACGATGTCACGTATTTTGTGAGACTTTTAAAGAATTTGAAATGAGCAAAAGAAGTTTGTTGAGATTTGCACTGATTAATAATCATCTGAATGCCGTGTTTAAACATCACTATCAGTAAACAACGAGAAATATTTGCTGCTGGTGTTAATAGTGAATTGAGCACATAAATTACTATTCATTGTGTGTAGATTTGGCATACAGGATAAACGCGCTGTTTGGAGTGGAATGACTGCAGACTACGTTTAAATGCAGAAGGTCTCCTTTGTGATTTAGGAGGCTTTGTAACCTGAATTAGTTGATGAATTTTCTATCGATCTTAAACAAGCCCAGATTCATCTCTGACACGCTGCTCACGCCACGACCATTCTCTCACCGTTATTAGCGAGTGCATTTAAGACCTTGGCCAAGGCGATTTCCTTGCATCACTTTCCCCTGGTACCGCGTTTCATGAACACTAGGCAAAATTTAGCAGTATTTTAGTTCGCCAAATCTGAACAGTTCTTTATAGAGGTGTAGTCATGTTCTCAGTGTGCAGATGAACTGAGGGGGACTGGGGGCGTGACTTTCTGTAGGGCTGGTAGAATCCAGCATGCCTTTTCGCTGTCTGCTTTCGCTTGTTATTGTTTTGATTCACTCACTATCTCATCAAGCGCACGGCAACGTATGAGAAAGTATGTAATTTTGGACTATTCCGAAATGTGAGTTGATGAGCGCGATCTAAACTGACTAATCCCATTTCCTTATCCGGGAATCGCGAAGACCCACGCTATTGGCTGACGATGTCACATGGACCCTTAACTTTGTTCACTTGACAGAAAGTAGGAGGGTTCTACGAAACAGGAAAACGAGTAAAGGGATACATATAAATTTTAGTATATTTTGTGTGCAATTCAAAGAAATTAATGGCCATGAGTTCCTATTTGATCAACTCCAACTATGTGGACCCTAAGTTTCCACCCTGCGAGGAATATTCCCAGAGCGACTACCTACCCAGTCACTCTCCGGACTACTACAGCGCCCAGAGGCAAGACCCCTCGTTCCAGCATGAGCCGATCTACCACCAGCGGTCGGGCTGCGCCGACCCACCCTACTCATCGTGCCAGGGTCCGGGGCAGCCTGCCGCGGTCATCTCTCCACGAGGTCACGTTCTACCCACAACCGCACTCTCAACCCCTCTCCCTGAACCAAGCCATCACTGCGACTCGGTAACTCCAAGCCCTCCGCCTGCCTGCGGTCAGACTCCTACTAGCCAAAACACTTCAACGGTCACCTCAAGAAAAGATCCCGTGGTATACCCCTGGATGAAAAAAGTCCACGTAAACATCGTGAGCCCGAACTATTCAGGGGGTGAACCAAAGCGCTCACGCACAGCATACACGCGGCAGCAAGTCCTGGAATTGGAGAAAGAGTTCCATTACAACCGCTATCTGACCCGCAGACGGAGGGTGGAGATTGCCCATACACTATGCCTATCCGAACGACAGATTAAGATATGGTTTCAGAACCGGCGCATGAAGTGGAAGAAGGACCATAAGCTTCCCAACACCAAAATACGCAGCAATTCTGCCAACACTAATTCAAGCGGCGGCCCGACATTGGGCAGCAATCAGAACCGAGCTAGTGGACCTCCGCCAAGTCTATAGCCCTCCACTGTTGCCCAAAACATGTACAATTATAAAAATCTAATTTTATGGAGTATAGAACGTGGATTTTACCCGCGTTATGTCTCCTTACTCTCCCCTGCACTCTAATTGCAGGGATAAAACACAAGGAAGATGTGGGGGGAAGGAGCAAAGAAAATGTTCATCTTTTAAACACTACAAATGGGTGAAGAGACTGAAGACTCGAACTCAAATGCTACTATAGATGGGTTGCCTTCCCAGTCTGGTTCCCATTTTTATCCCGCACGCCTTTTCCTGCTCACTCGCCCCTTCCATAAGCACAGAAGGCGGCAGATAGTTTTCAGATTGGGTGAAGATGGATCCGTGTTTCATCTTTAATCACGCCAAACTCGGCCCCATTTGTCATGTTTACTCTGTGGTACAAAGGATGAACCGTAGGCCTGCCCATTACCTCGACGTCTAGCGTTGTGCTTAATAAA

Function

symbol description
hoxb4a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain neural keel; nervous system; neural rod; pharyngeal arch; and somite. Orthologous to human HOXB4 (homeobox B4).
hoxb4 Enables sequence-specific double-stranded DNA binding activity. Involved in hematopoietic stem cell differentiation; positive regulation of stem cell differentiation; and positive regulation of transcription by RNA polymerase II. Located in centrosome and nucleoplasm.

NR:

description
Hoxb-4 homeodomain protein

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01652735_01654473.mRNA True 2326 mRNA 0.45 2 1652277 1655606

Neighbor

gene id symbol gene type direction distance location
CI01000034_01648924_01649935 NA coding downstream 1874 1648898 ~ 1650403 (-)
CI01000034_01625293_01629938 HOXB3AA, HOXB3A, HOXB3 coding downstream 20905 1624700 ~ 1631372 (-)
CI01000034_01621979_01623991 HOXB2, HOXB2A coding downstream 28208 1621789 ~ 1624069 (-)
CI01000034_01603228_01604932 HOXB1A coding downstream 46847 1602434 ~ 1605430 (-)
CI01000034_01498024_01498299 NA coding downstream 152441 1497080 ~ 1499836 (-)
CI01000034_01666303_01667765 HOXB5A, HOXB5AA, HOXB5 coding upstream 10458 1666064 ~ 1667900 (-)
CI01000034_01670204_01671915 HOXB6AA, HOXB6A, HOXB6AB, HOXB6 coding upstream 14297 1669903 ~ 1671935 (-)
CI01000034_01675050_01677339 NA coding upstream 19187 1674793 ~ 1678699 (-)
CI01000034_01680053_01683539 HOXB7A coding upstream 23983 1679589 ~ 1683539 (-)
CI01000034_01684215_01687260 HOXB8AB, HOXB8, HOXB8A, HOXB8AA coding upstream 28571 1684177 ~ 1687260 (-)
G171631 NA non-coding downstream 250365 1400324 ~ 1401912 (-)
G171582 NA non-coding downstream 403924 1248143 ~ 1248353 (-)
G171572 NA non-coding downstream 454007 1197978 ~ 1198270 (-)
G171405 NA non-coding downstream 524634 1126485 ~ 1127643 (-)
G171549 NA non-coding downstream 529558 1122417 ~ 1122719 (-)
G171704 NA non-coding upstream 55072 1710678 ~ 1710957 (-)
G171712 NA non-coding upstream 85038 1740644 ~ 1741140 (-)
G171724 NA non-coding upstream 108895 1764501 ~ 1768078 (-)
G171731 NA non-coding upstream 125240 1780846 ~ 1781056 (-)
G171751 NA non-coding upstream 171990 1827596 ~ 1830627 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 334023 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 575055 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1067994 571856 ~ 577775 (-)
G171229 NA other downstream 1385031 229404 ~ 267246 (-)
G171755 NA other upstream 208512 1864118 ~ 1866373 (-)
G171835 NA other upstream 786215 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 854207 2510061 ~ 2511521 (-)
G172016 NA other upstream 1579357 3234963 ~ 3236615 (-)
G172151 NA other upstream 1735907 3391144 ~ 3451802 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025310 hoxb4a coding NC_007114.7 CM002887.2 23710839 ~ 23723982 (+)