XLOC_009177 (tbcela)


Basic Information

Item Value
gene id XLOC_009177
gene name tbcela
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20940904 ~ 20956454 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018061
ATCAGCAAGATTGTTTCCAATGTCCCAAACCTGGAGTTCTTAAACCTTAGCTCTAATcagctgagtgatgcagtcttgGATCCGGACTGTGCTAAGGCCTTTTCTAGCATCCGCAGATTCGTTCTTAACAATACCCAAGTGTCCTGGGACACAGTACATACTTTCACGCAAGAGATGCCTGAGTGAGTATCTTCTgcaatttttgcatttttcataAATACAAAATGAACATGAAAACGGTATGTAGTTTTAGATTTATGTTTTATACAAAGTACTAAAAGTTTATATatacaaaagtacaaaagtacaaaagtacAAAGTTTATATATACAAAGTACTAAAATGGCTGTTTACGTAAAATCCTAGGACAAAAATGTCACAGTTGACAGCCCTCAAAAAAGTTGCATTGATGTATAAATCACATTGgtgtacattttattatttaattaatacaaataattaaatataaatctgGTAATCCTATATAATATCAAatgtttaaaattctaaacatgTCCTTCACTTGGCAATAAATCTGTTCAATTTAATATTACTCAGAACAGAAAAGAGACTGAAAAAATGTAAGTATAAAAGAAGCTGAAATTTACGGTGAGATTTGTTATAAACCACATTCATCAGAAATATCAGTCTAAATGAtttaaagtgaaagtgaaactagCAGCATGTGTGAAATGCACTGTAGTTGCAGCTCATTTCAGatgatttaaatgtgttatatCCAGGCTAGAGGAGCTGTTTCTGTGCCTTAATGAGTACACCACTGTGACCCTGGCCGCCATGCCCTGCCCCACACTGCGTCTGCTCCACATCACAGATAACAACCTCCACGAGTGGAACGAAGTACGGAAAATTGGCTCCATGTTCCCAGCACTGGACACTCTGGTCATGGCCAACAACAACCTGAACAGCATTCAGGAGTCAGGAGAAATCCTTCACCGCCTGTTCCCTAATCTTCGAAGCATCAATCTGCATAACTCGGGACTTAATCGATGGGAGGATATTGAGAAGCTAACCTTTCTGCCTAAGCTGGAAGAGGTGAGGTTGCAAGGCATTCCTCTACTGCAGACTTACACAAGCACGGAGCGGCGCAGTCTGATGATAGCCCAGCTGCCGTCAGTGACCAGTCTGAATGGAAGTGTGGTGACGGATGGTGAGAGAGAGGATGCTGAGAGATTCTTTATCCGCTATCACTTGGATCATTCTGAAGAAGAACTGCCTCACAGATATCACTGTTTGGTGACCAAATATGGGAAACTGGCTCCTCTGGCTGAGATCGACCTGAGACCACGTTTCCATGCCAAAGTAGAGGTGCGCTTTGAGGACAAAGTCGAGCAGGTGAGCATCCGTTTGGACCAGACCGTGGCCGAGCTCAAGAAGCAGCTGAAGACTGTAGTACAGCTTCCTACCAACAACATGCGTCTTTACTACATAGACAAGGGCACTGCCTATGGCCCCGATGAGCTCAAATACAGTGCACGGGCCTTGCACTCCTACAGCATTCAAGATGGGGATGAGATCCTGGTAGTTCCAAAAGCAAAATAACCTACTTTTTTCCTCCACCACCAGAAACACAGAAAGCTACATTTAAATTACCAAACCCACTTTGAACTAGTGCTGCCTATGCTCCACAGAGTGAATGGGACTATctttcagggaaaaaaaaaacatttaaggactTGCTGGAGCTTATGTCACGTATCACATGTGTTGCCAGTAGTAAAGGTTTAATTTTTGACTTCACAAGCACCCCGGTATTTTCAAAGGCCTGTTTCTTCAAGAGTAAAGCACAGTGGAAAGATGTGCGTTTTACCATTCTTAAGACAATCACCCATAGCTGACAGAAAATGTTGCACTGCACTGATGTCTTAAAGAAGAAATTGTGGAAACCCATTGCCTGCTGATGTGTGTCATATGCTGTCAGCCATTTATTACATGCAAAAGACTCTCAGGCCTTATATTCTGTATGGGCAGTGCTAGCTTCACATGAAGAAAGATTCACAAAGGTTTTTAAATATCCAGTTCATTTAAgacgcttttaaaaaaaaaaattattctgttgGTTCCAGATGGAAGTGATTTTCTTTGGTTTCTTTgcaatttgtgtgtgttttctgttgcTTTAGAAGTGGtcgctcaaatatatatatatatattagggagtTTGTTGATGTGtggatgtttgttttatttaattgacaaagACCCTGTTTCCGCCTGGTATTAACGAAAGAATTGAGATGCATCTCCTGTGACTGCTTATCTATGGACTTCATCAAGTCCTATGTTTTTGTTTCATCATTCTCTTCATGGAAGATGAACTAACCTTGTTATCTGGCTTATGAGCGAGTCATTTCATGATTTCAGCTGTAATCTGTGTGTTTTGGTACAACGCAGAGAAGTATAAGTACCTTGCTTTCTCAAAATCATTAGCAAAATACTGGTCAACTTGTTGCTGTTTGAATGCTTTTGATTACAAAACATAATATCCTTTCACACCAACTTACCATATTGTCAACTACTAGTTGATCTAATTGACATACGCATATATTTAGGTTTGTTCACAATTGGCAGACTTGATTCAATAAAAACTTTGTGAGATTCCAGATTACTTCTCTAAAAAAGTTGTAATACTTTTACATACAAACCTTGAGGCGACACAATgactcaggggttagcactgttgcctcaaagcaagaaagtcgctcgtttgagtcctgactggctcagttagcatttctgtgtggaagttgcatgtttgcatgggtgcttaactaaattggccgtatgagtgtgcatgagtgtgtatgaatgtttcccagtactgggttgcagctggaaaggcatctgctgtttaaaacatatgctggataagttggcggttcattccgcagtggcagcCTCTAatcaataaaaggactaagctgaaggaaaatgaatgaattaatacaaACTTTGGAGTGCATCTGCCTGCAAATAACACTGAGGCAGTTAAACTAAAATACTCAACGGCTCGGACCAGACATCTAAACGAGTCAAAAACAGGATATGATGTCACAAAAAGCCGCAATATATtcaataatacagttttttttttcttcatcaaaGTTAGCAATTAGTAAATAGCAGTGTAATAATTTTGGCCCTTGCAGATCAGCTGGCCTCAGGGTGCTGTAGtgactttttaacacattatataaGCTCTGAGCTGGTAAAATGTAATCGTATTTATGTTTGATTTCAATAGCAACATTTTGAATGTTAAAACAACATAactttttctgtttgtgtgtctgtgtgtgtgagtgtgtggttaGGACCAAATGACCCAAGAGACCCTAAATACCAGGTGAAAATGGGACAAAAagatcacattattattattattattattattattattattattattattattattattagtgttttttttgtagatttaccAATTGATTTCatcttgttaaaaacaaaacgaATCAGTAGCAAACTAGTATCCAGCTAGTATAAAATAAACAGGAGTTTTGGCTCTAGTATTTAAAGccatagtttactcaaaaatgaagaTTCCCTGATCATtcactcatgtcattccaaacctgtggAACTTCTTTCCATTTATAGATCTAGCAACTATTGAGAAATATATGAAGTTTTCCTTTTTGTTAGTACAATGGATGTCAGTAGTAACCAAAATTGTTTGActgccaacattcttcaaaatatcttcttttgtgtcgtGCAGATAAACAACTATACCGGTTTGGAGTGATGTGATGGTGAGTTAATCTATCAGAGTTTTGATTTCTATGTGATCTATCACGTTTTGGATACTGGAGCTGAAACATTTGTTGAAATGTGCAATTTAAGACTGTTTCTTTGCGGTGCAGAAAGTTTATTTTACAAAGATAAAACCAGCAAATTGTTCACTCATACTGTCAAATCACTGcatgcacaatctcatttgcattaaaaacagtttgctgcattttatttcataaatatgaTATTAGCATGACTTAAAGGGTGGACTGAACAGAAAAGCACCGAAATCCTTTCTACATTACTGTCGCAAATGCTTAGGTTAGTAGAAATTAGATTTCATATAATATACTGATATATAGATACATGTGTATGAAAAGATGTGCAAGATTTCTGAAAGCTATACATTTCTCAGACATTAACATACTATTACATATACTGGTCAGATAGATGTGACCATACTGCTTAGGTTCagacttatttatttttccttttgtattttcaCAATTGCAAAAAATGGAAATGAGTAGATAGTCAGAGATATAATATAGTGGCTTATATGCGTACAACTTAAACTGAAATGGATAATAAACTGTTAGAATCAGCTTTCATAGTtgtagttattaaaaaatatggTGATTATAAATGAAGGTTCTGCCATCCTCTATGCCTTTAACACTCTTTATGCCTTTACCTGCGACCCCTAATCAAACATTAAAGTAGAATGAAGCGCTGTTTTTTTCCTCCTCCACAGGATTTCCTTTTAGAGTATCAATATTTGATGTTTTGTGCCCACATAGGACATGCTACTGATATTAGTGTTTCACTTTTggataattattttatgttttttcttctatatgtatgcattattaatattcagATTTTATGAGCTTGAAGATAACGCCACTTAAACTGTGACTGATGGGTAAGATGTGAGAAAACTGATCAATTTGCCACTGAATACCATGTTTACCAGGTGAAATAGACTgaaattgttttatttctatttaagaCACTTTTAATATGTGTGTTTACactatactttatatattttttatttccttattgtacgttttatatgtattttgttgTCTTTGCTGGGAGATTTGGTTTCGACTAAAGTTTAAAATTGAACGTGTCTCACTTTACATTATCTGTTGCAGCTATAATCTATGGTTTAAGTTCATTTGTAAAGGGTGCGTAAAAAAGCTGTTAAGCGCGAAGATGGATGAGAAGTCCAGAGAGTCATTAATCTAATGGATGCATTAGGCCTGTTAGTGTAATGAACACTTTACAGACTTAAAGTTGAGTTGCTCACGGTCACACCACACCATTAGCGTGTTACAATTTGAAAATCAGATCTGACTGTTTTATACCATTGATTTGCCAGCGTATATCTGTGCACTGATGTATCTGTGCTTGAGAGCTGAATGGAGTGGCTCAAAGGATAAGGGAGAATAAACTTTTAATGACTGTCTTCACTGTGTTATtttgatatttatatattactACAGACTTTGTTcggtttttaaattgtatatatattttattttttatttattctttttaagtTCTTTTAGATGTTAGCATTTCAAGTCTGCTTTATTTTTTGCAAagctttagtattattatttttatttttatg
>TCONS_00018062
atggagaatgttttaaatgatagTGTTACCTTTTTTCTGATCATTTTATGTGAATCAGGACTTAATCGATGGGAGGATATTGAGAAGCTAACCTTTCTGCCTAAGCTGGAAGAGGTGAGGTTGCAAGGCATTCCTCTACTGCAGACTTACACAAGCACGGAGCGGCGCAGTCTGATGATAGCCCAGCTGCCGTCAGTGACCAGTCTGAATGGAAGTGTGGTGACGGATGGTGAGAGAGAGGATGCTGAGAGATTCTTTATCCGCTATCACTTGGATCATTCTGAAGAAGAACTGCCTCACAGATATCACTGTTTGGTGACCAAATATGGGAAACTGGCTCCTCTGGCTGAGATCGACCTGAGACCACGTTTCCATGCCAAAGTAGAGGTGCGCTTTGAGGACAAAGTCGAGCAGGTGAGCATCCGTTTGGACCAGACCGTGGCCGAGCTCAAGAAGCAGCTGAAGACTGTAGTACAGCTTCCTACCAACAACATGCGTCTTTACTACATAGACAAGGGCACTGCCTATGGCCCCGATGAGCTCAAATACAGTGCACGGGCCTTGCACTCCTACAGCATTCAAGATGGGGATGAGATCCTGGTAGTTCCAAAAGCAAAATAACCTACTTTTTTCCTCCACCACCAGAAACACAGAAAGCTACATTTAAATTACCAAACCCACTTTGAACTAGTGCTGCCTATGCTCCACAGAGTGAATGGGACTATctttcagggaaaaaaaaaacatttaaggactTGCTGGA
>TCONS_00018063
GGAGCAGCGGAGACAGTGCGAGACTTGAAGAGAAATTATGTGGTTAAATTGACGGCCAGGAGTTGGTGTGAATAACGCCTTCGCGAGTCTCACGGAAGATCTGCTCGTTAATACTGTTGTTATCTCTGAAAAGTGTTGTGAAGACAAAGAGCAGGTCCCGTCTCTCTACTGGTGTGCAGCCACATTTTTCCATCGAACCTTGACACTCAATGGACCAATAATTTCATGCAGTAAAagtaaagtttattgttttatgacACAAGCTTTGAATGTGGACCTGTGAAGACAAATCGCAGAGCAGCTGCATAAAGTGCATGTTGTGGGACAGCGCAATGGACTCTTCGGAGATAGAAGGCCGCACTTTTATGCAGGCGATCAGTGAGAAGTACAGTCCAGAGAACTTTCCTTGCCGTCGGGGTCCAGGCATGGGGGTTGTGGTTGTGCCATCTGGACCACAGGGATCACCGATGAAAGACCGCCTGAACCTGCCCAGCGTGCTGGTCTTGAACGGCTGTGGAATTAGTCATGCAGGAGACCAGGGGGAAATCGCTGCCTTCTGTGCTCACGTAGTAGAACTTGATCTGTCCCACAACAAGCTTCAAGACTGGCACGAGATCAGCAAGATTGTTTCCAATGTCCCAAACCTGGAGTTCTTAAACCTTAGCTCTAATcagctgagtgatgcagtcttgGATCCGGACTGTGCTAAGGCCTTTTCTAGCATCCGCAGATTCGTTCTTAACAATACCCAAGTGTCCTGGGACACAGTACATACTTTCACGCAAGAGATGCCTGAGCTAGAGGAGCTGTTTCTGTGCCTTAATGAGTACACCACTGTGACCCTGGCCGCCATGCCCTGCCCCACACTGCGTCTGCTCCACATCACAGATAACAACCTCCACGAGTGGAACGAAGTACGGAAAATTGGCTCCATGTTCCCAGCACTGGACACTCTGGTCATGGCCAACAACAACCTGAACAGCATTCAGGAGTCAGGAGAAATCCTTCACCGCCTGTTCCCTAATCTTCGAAGCATCAATCTGCATAACTCGGGACTTAATCGATGGGAGGATATTGAGAAGCTAACCTTTCTGCCTAAGCTGGAAGAGGTGAGGTTGCAAGGCATTCCTCTACTGCAGACTTACACAAGCACGGAGCGGCGCAGTCTGATGATAGCCCAGCTGCCGTCAGTGACCAGTCTGAATGGAAGTGTGGTGACGGATGGTGAGAGAGAGGATGCTGAGAGATTCTTTATCCGCTATCACTTGGATCATTCTGAAGAAGAACTGCCTCACAGATATCACTGTTTGGTGACCAAATATGGGAAACTGGCTCCTCTGGCTGAGATCGACCTGAGACCACGTTTCCATGCCAAAGTAGAGGTGCGCTTTGAGGACAAAGTCGAGCAGGTGAGCATCCGTTTGGACCAGACCGTGGCCGAGCTCAAGAAGCAGCTGAAGACTGTAGTACAGCTTCCTACCAACAACATGCGTCTTTACTACATAGACAAGGGCACTGCCTATGGCCCCGATGAGCTCAAATACAGTGCACGGGCCTTGCACTCCTACAGCATTCAAGATGGGGATGAGATCCTGGTAGTTCCAAAAGCAAAATAACCTACTTTTTTCCTCCACCACCAGAAACACAGAAAGCTACATTTAAATTACCAAACCCACTTTGAACTAGTGCTGCCTATGCTCCACAGAGTGAATGGGACTATctttcagggaaaaaaaaaa
>TCONS_00018064
AATGGACCAATAATTTCATGCAGTAAAagtaaagtttattgttttatgacACAAGCTTTGAATGTGGACCTGTGAAGACAAATCGCAGAGCAGCTGCATAAAGTGCATGTTGTGGGACAGCGCAATGGACTCTTCGGAGATAGAAGGCCGCACTTTTATGCAGGCGATCAGTGAGAAGTACAGTCCAGAGAACTTTCCTTGCCGTCGGGGTCCAGGCATGGGGGTTGTGGTTGTGCCATCTGGACCACAGGGATCACCGATGAAAGACCGCCTGAACCTGCCCAGCGTGCTGGTCTTGAACGGCTGTGGAATTAGTCATGCAGGAGACCAGGGGGAAATCGCTGCCTTCTGTGCTCACGTAGTAGAACTTGATCTGTCCCACAACAAGCTTCAAGACTGGCACGAGATCAGCAAGATTGTTTCCAATGTCCCAAACCTGGAGTTCTTAAACCTTAGCTCTAATcagctgagtgatgcagtcttgGATCCGGACTGTGCTAAGGCCTTTTCTAGCATCCGCAGATTCGTTCTTAACAATACCCAAGTGTCCTGGGACACAGTACATACTTTCACGCAAGAGATGCCTGAGTGAGTATCTTCTgcaatttttgcatttttcataAATACAAAATGAACATGAAAACGGTATGTAGTTTTAGATTTATGTTTTATACAAAGTACTAAAAGTTTATATatacaaaagtacaaaagtacaaaagtacAAAGTTTATATATACAAAGTACTAAAATGGCTGTTTACGTAAAATCCTAGGACAAAAATGTCACAGTTGACAGCCCTCAAAAAAGTTGCATTGATGTATAAATCACATTGgtgtacattttattatttaattaatacaaataattaaatataaatctgGTAATCCTATATAATATCAAatgtttaaaattctaaacatgTCCTTCACTTGGCAATAAATCTGTTCAATTTAATATTACTCAGAACAGAAAAGAGACTGAAAAAATGTAAGTATAAAAGAAGCTGAAATTTACGGTGAGATTTGTTATAAACCACATTCATCAGAAATATCAGTCTAAATGAtttaaagtgaaagtgaaactagCAGCATGTGTGAAATGCACTGTAGTTGCAGCTCATTTCAGatgatttaaatgtgttatatCCAGGCTAGAGGAGCTGTTTCTGTGCCTTAATGAGTACACCACTGTGACCCTGGCCGCCATGCCCTGCCCCACACTGCGTCTGCTCCACATCACAGATAACAACCTCCACGAGTGGAACGAAGTACGGAAAATTGGCTCCATGTTCCCAGCACTGGACACTCTGGTCATGGCCAACAACAACCTGAACAGCATTCAGGAGTCAGGAGAAATCCTTCACCGCCTGTTCCCTAATCTTCGAAGCATCAATCTGCATAACTCGGGTACCATTGTGTTGTTGATAGAGAGTGTAGAAGAGTCTAAAGTCGTAAGAATACATGGATCTTTATTTGTATGCTAAgctatgtttttttatgttttgttttgtatattttgtttaaCAGTAACAATGTATGAGCGTCTCAAACATTCTTGTTTTTGCACTAAATAGTTTATCCGCAAAGTGTCAACACTGAACAAGGCCTTTGTTTCAGAGTTGGAAAAGAACAACATCATACATCTGAAGATGGCATAAACAGTAGATGTACTTTAAAGGGCTGTGTATTTACTGTgcatgtatgtaaaaaaaaaaa
>TCONS_00018065
CTGGAGTGACGTCACTTCCGTGACAATAGGGTCAGCGTGACAGATTTATCAACAATAACAAGAGCGACACGGAGCAGCGGAGACAGTGCGAGACTTGAAGAGAAATTATGTGGTTAAATTGACGGCCAGGAGTTGGTGTGAATAACGCCTTCGCGAGTCTCACGGAAGATCTGCTCGTTAATACTGTTGTTATCTCTGAAAAGTGTTGTGAAGACAAAGAGCAGGTCCCGTCTCTCTACTGGTGTGCAGCCACATTTTTCCATCGAACCTTGACACTCAATGGACCAATAATTTCATGCAGTAAAagtaaagtttattgttttatgacACAAGCTTTGAATGTGGACCTGTGAAGACAAATCGCAGAGCAGATCAGCAAGATTGTTTCCAATGTCCCAAACCTGGAGTTCTTAAACCTTAGCTCTAATcagctgagtgatgcagtcttgGATCCGGACTGTGCTAAGGCCTTTTCTAGCATCCGCAGATTCGTTCTTAACAATACCCAAGTGTCCTGGGACACAGTACATACTTTCACGCAAGAGATGCCTGAGCTAGAGGAGCTGTTTCTGTGCCTTAATGAGTACACCACTGTGACCCTGGCCGCCATGCCCTGCCCCACACTGCGTCTGCTCCACATCACAGATAACAACCTCCACGAGTGGAACGAAGTACGGAAAATTGGCTCCATGTTCCCAGCACTGGACACTCTGGTCATGGCCAACAACAACCTGAACAGCATTCAGGAGTCAGGAGAAATCCTTCACCGCCTGTTCCCTAATCTTCGAAGCATCAATCTGCATAACTCGG

Function

symbol description
tbcela Predicted to enable alpha-tubulin binding activity. Predicted to be involved in microtubule cytoskeleton organization; post-chaperonin tubulin folding pathway; and tubulin complex assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human TBCEL (tubulin folding cofactor E like).

GO:

id name namespace
GO:0007021 tubulin complex assembly biological_process
GO:0007023 post-chaperonin tubulin folding pathway biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005737 cytoplasm cellular_component
GO:0043014 alpha-tubulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1719 Predicted to enable alpha-tubulin binding activity. Predicted to be involved in microtubule cytoskeleton organization; post-chaperonin tubulin folding pathway; and tubulin complex assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human TBCEL (tubulin folding cofactor E like).

Ensembl:

ensembl_id ENSDARG00000002682

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018061 False 5428 mRNA 0.36 4 20940904 20949692
TCONS_00018062 False 763 lncRNA 0.47 3 20944627 20948180
TCONS_00018063 False 1739 mRNA 0.49 9 20944646 20956384
TCONS_00018064 False 1715 mRNA 0.39 4 20948384 20954552
TCONS_00018065 True 810 processed_transcript 0.47 4 20948693 20956454

Neighbor

gene id symbol gene type direction distance location
XLOC_009176 usp2a coding downstream 1325 20900627 ~ 20939579 (-)
XLOC_009175 aldh3a2a coding downstream 100994 20830146 ~ 20839910 (-)
XLOC_009174 CR848784.2 coding downstream 110779 20828421 ~ 20830125 (-)
XLOC_009173 CR848784.5 coding downstream 129493 20809709 ~ 20811411 (-)
XLOC_009172 CR848784.4 coding downstream 141074 20798128 ~ 20799830 (-)
XLOC_009178 BX548078.1 coding upstream 3615 20960069 ~ 20978248 (-)
XLOC_009179 si:ch211-212c13.10 coding upstream 35367 20991821 ~ 21014270 (-)
XLOC_009180 CR626907.2 coding upstream 123372 21079826 ~ 21109608 (-)
XLOC_009181 a2ml coding upstream 157511 21113965 ~ 21132480 (-)
XLOC_009182 sb:cb37 coding upstream 180592 21137046 ~ 21155657 (-)
XLOC_009166 CR626887.2 non-coding downstream 595172 20344912 ~ 20345732 (-)
XLOC_009164 NA non-coding downstream 659111 20253743 ~ 20281793 (-)
XLOC_009185 NA non-coding upstream 399127 21355581 ~ 21369561 (-)
XLOC_009186 NA non-coding upstream 537398 21493852 ~ 21507536 (-)
XLOC_009187 BX663519.1 non-coding upstream 565349 21521803 ~ 21540276 (-)

Expression


Co-expression Network