RNA id: TCONS_00018065


Basic Information

Item Value
RNA id TCONS_00018065
length 810
RNA type processed_transcript
GC content 0.47
exon number 4
gene id XLOC_009177
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20940904 ~ 20956454 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAGTGACGTCACTTCCGTGACAATAGGGTCAGCGTGACAGATTTATCAACAATAACAAGAGCGACACGGAGCAGCGGAGACAGTGCGAGACTTGAAGAGAAATTATGTGGTTAAATTGACGGCCAGGAGTTGGTGTGAATAACGCCTTCGCGAGTCTCACGGAAGATCTGCTCGTTAATACTGTTGTTATCTCTGAAAAGTGTTGTGAAGACAAAGAGCAGGTCCCGTCTCTCTACTGGTGTGCAGCCACATTTTTCCATCGAACCTTGACACTCAATGGACCAATAATTTCATGCAGTAAAagtaaagtttattgttttatgacACAAGCTTTGAATGTGGACCTGTGAAGACAAATCGCAGAGCAGATCAGCAAGATTGTTTCCAATGTCCCAAACCTGGAGTTCTTAAACCTTAGCTCTAATcagctgagtgatgcagtcttgGATCCGGACTGTGCTAAGGCCTTTTCTAGCATCCGCAGATTCGTTCTTAACAATACCCAAGTGTCCTGGGACACAGTACATACTTTCACGCAAGAGATGCCTGAGCTAGAGGAGCTGTTTCTGTGCCTTAATGAGTACACCACTGTGACCCTGGCCGCCATGCCCTGCCCCACACTGCGTCTGCTCCACATCACAGATAACAACCTCCACGAGTGGAACGAAGTACGGAAAATTGGCTCCATGTTCCCAGCACTGGACACTCTGGTCATGGCCAACAACAACCTGAACAGCATTCAGGAGTCAGGAGAAATCCTTCACCGCCTGTTCCCTAATCTTCGAAGCATCAATCTGCATAACTCGG

Function

GO:

id name namespace
GO:0007021 tubulin complex assembly biological_process
GO:0007023 post-chaperonin tubulin folding pathway biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005737 cytoplasm cellular_component
GO:0043014 alpha-tubulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1719 Predicted to enable alpha-tubulin binding activity. Predicted to be involved in microtubule cytoskeleton organization; post-chaperonin tubulin folding pathway; and tubulin complex assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human TBCEL (tubulin folding cofactor E like).

Ensembl:

ensembl_id ENSDART00000141015

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018062 lncRNA downstream 513 20944627 ~ 20948180 (-) False XLOC_009177
TCONS_00018053 lncRNA downstream 109473 20836176 ~ 20839220 (-) False XLOC_009175
TCONS_00018038 lncRNA downstream 483374 20464488 ~ 20465319 (-) True XLOC_009169
TCONS_00018032 lncRNA downstream 602961 20344912 ~ 20345732 (-) True XLOC_009166
TCONS_00019145 lncRNA downstream 666900 20264703 ~ 20281793 (-) True XLOC_009164
TCONS_00019146 lncRNA upstream 399127 21355581 ~ 21369502 (-) False XLOC_009185
TCONS_00019148 lncRNA upstream 401910 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019147 lncRNA upstream 401910 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019149 lncRNA upstream 408507 21364961 ~ 21369494 (-) False XLOC_009185
TCONS_00019150 lncRNA upstream 408507 21364961 ~ 21369561 (-) False XLOC_009185
TCONS_00018057 mRNA downstream 9114 20908402 ~ 20939579 (-) False XLOC_009176
TCONS_00018060 mRNA downstream 15072 20925491 ~ 20933621 (-) True XLOC_009176
TCONS_00018059 mRNA downstream 15116 20925220 ~ 20933577 (-) False XLOC_009176
TCONS_00018058 mRNA downstream 15119 20908463 ~ 20933574 (-) False XLOC_009176
TCONS_00018056 mRNA downstream 32442 20900627 ~ 20916251 (-) False XLOC_009176
TCONS_00018067 mRNA upstream 35367 20991821 ~ 21014270 (-) False XLOC_009179
TCONS_00018068 mRNA upstream 35498 20991952 ~ 21014015 (-) True XLOC_009179
TCONS_00018070 mRNA upstream 157511 21113965 ~ 21132480 (-) False XLOC_009181
TCONS_00018071 mRNA upstream 157513 21113967 ~ 21132480 (-) True XLOC_009181
TCONS_00018072 mRNA upstream 180592 21137046 ~ 21155657 (-) False XLOC_009182
TCONS_00018048 other downstream 118568 20828421 ~ 20830125 (-) True XLOC_009174
TCONS_00018047 other downstream 137282 20809709 ~ 20811411 (-) True XLOC_009173
TCONS_00018046 other downstream 148863 20798128 ~ 20799830 (-) True XLOC_009172
TCONS_00018045 other downstream 167577 20779412 ~ 20781116 (-) True XLOC_009171
TCONS_00018019 other downstream 1195719 19745731 ~ 19752974 (-) False XLOC_009156
TCONS_00018066 other upstream 3615 20960069 ~ 20978248 (-) True XLOC_009178
TCONS_00018069 other upstream 123372 21079826 ~ 21109608 (-) True XLOC_009180
TCONS_00018076 other upstream 565349 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018099 other upstream 1304427 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018101 other upstream 1764311 22720765 ~ 22720881 (-) True XLOC_009203

Expression Profile

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