RNA id: TCONS_00018069


Basic Information

Item Value
RNA id TCONS_00018069
length 4510
RNA type unprocessed_pseudogene
GC content 0.41
exon number 31
gene id XLOC_009180
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21079826 ~ 21109608 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCGAGATCATGGCTCTGATTGTTAGCTGTTGTTTAAAAGGGTTCTTCCTGATCTTTATCCTCTTCCTCTGtgtcaatggaaataaaacaagaccAATCTTCATGGTGACCTTTCCTGCTGTGATTGAGTCAGGATCTGATGCCAAACTGTGTGCAAGTCTTCTGAAGCCCAACAAAACCCTCTTCATGAACATTTATCTGGTTCATAGTAACCAGAGCACATTATTGCTGCAGGAGAAAGCTGAGCAAGAGTTTCACCGCTGTTTTAACTTTCAGGCTCCTCTAGCAGAAGCAGAATCAGTGCAGAAAATCAAGGTTGAACTTCAAGGAGAGTCCTTCAACATGACTGAAGAGAGAAAAGTCATGTTCAAATCTTACCATCCTCTGACTTTTATTCAGATGGATAAACCCTTCTATATTGCTGGACAGACTGGTAAGTTGCAAATATTATGGCATGTAAAAGATTATTGtggaaaattatgaaaataacctgcgcatgtttattatgttttaGACAGTCAAGATAACAGGATTGGTCAATGGACAAATGTTTCCTCAACAAGGTGGATTTTGCAGCGTTCTTATGATTTAAACCCAGAGGCCCGTGAAGGCACGTACAAAGTGAAGGCTTTCATTGGGGAAAGGATGATCTCACATGATTTTGATGTGAAAAAATATGTTTTGCCTAAGTTTGGAGTTTTTGTGATTTCACCAAATCCTGTGAGCATAGATGATGAGTTCATGGTCATTGAGGTTTGCGGAAAATACACTTACGGGAAGCCTGTACTTGGTAAATCATCTGTGAAAGTGTGCCGTAAAACTCTTGACACTCACAGTCCACTGTGTGTAAAAGAAAGCACAGAGATAAGTAAAACAGGCTGTGCCAACCATACCTTAGCTTTGTCTGTCTTTTTTTACCCAACACATCATCAACTGCTAAATGATCTTCATATTGAAGCTACAATAACAGAAGAAGAAACAGAGATCACCATGACACAATCTAACACAATATCTCTCACTTATGAAATTGGCAAAGTCACATTTACTGACCTGCCCAAAACATATGAATATGGATCAGTCATAGAGGGAAAAgtcaAACTGGCAAGATTCAGGGGAACAGCAGTTCCAGGcaaacacatttatatattaGAAAATTACAGCTGGCCACCTAAAGTGCTCCTGAATCTTACTACAGACAGCAATGGACTGGCAAACTTCTCTCTTAATACATTGCGTTTTGTAAAAAGTGATATTAATCTGATGGCAAGTGCGTATCCAGGCTATCGTTCTTATTTTCAAAAATCTCCCTACTTCAATACGGATGAAAAAACTGTGCAGTTTTTTCCCAAACCTGCTGCTTCATACACCCCAACATTTAGTGAACTCATTATAGAAAATATTGAGCAGCCATTAAAGTGTGGCACTGAGATTACAGCCACTGTCAagtattattttgttaaagagaCCGTTAAAATTTTCAATGCTGACATTGTCTATATGGTCTTGTCCAGAGGAGTGATCATTCATCATGGATATGAGAAGGTTGAAGTGAAGTCTTCTAATGCAGTAGCAAGTGGCACAATGTCCTTCAAACTGTCTGTTGGTGCAGATGTGGCTCCTTTAGTGCAGATTCTGGCATACTGTGTCCTGCCAAGTGAAAATATTGCTATTCATAGTGAAAACTTTCATGttgaaaagtgtttaaaaaataagGTTTCCCTGCAGTTTTCTCCTGCTAAAGCAGTTCCTGGTGAGAAAAACACTCTCCAGCTCTCAGCTCAGCCTGGTTCACTGTGTGGCCTCAGTGCTGTAGATCAGAGCGTCCtgatgctggagtcaggaaaacGTCTGGATGCTGACAAGATCTTCAACCTGCTGCCAGTAAAGTATGGATCAGGGTATCCTTCCAGTCTTCCTGATGAGAAGGAGTGTTTTTATATGATGGCGGTCCCAATAGAAAACATCTTTAAATCTTCAAAGAGAATAGGATTGAAGATGGCAACAAATTTGGCTGTGAGATCTGGAACTTCGACTTGTGAAATGTACAAGAAGTTCAGTATGTTTGCTATTCTACCTgttgattaataaatatttagtaaattcaTTATGTAGGATTTTATAAGATCTATAAATTGATGGAAACCAGGTATGGTATTAAATGAATTACTCTGCCATTgtacatttaaagggcacctgtggtggtCCTTTCAACCCATTCTATGTATTTTGGGTAAAACAATAGCATGCAACTTAAGATCCTATTTTTtgggtccagggtcacatatatgaATAGTTATGATATACCTTTTTTATGTCCCAcactaatattatttaataagttTTACACTATTTGCTCCAGTGACTCTGGATCAGCCGAGGTTCCTGTCACAGTTCCTGACACCATCACCTCTTGGGAGACGGAGGCCTTCTGTCTGTCCTCCACAGGTCTGGGTTTGGCTCCTCCTGCTCAGCTGACAGTTTTCCAGCCCTTCTTCCTTGAGCTCTCTTTACCTTACTCCATCATCCGTGGAGAGATGTTTGAGCTCAAGGCCACTGTCTTCAACTATCTGTCCAAGTGCATCATGGTTAAAGTGAGCCCAGCTCCTTCCTCAGACTACACTCTCAAAGCCTCCTCTGATGATCAGTATTCATCCTGTCTCTGTGCTAATGGAAGAAAAACCTTTAAATGGATCCTCACTCCTTCTGTTATTGGAGTGGTGAATGTTACAGTCAGAGCAGAGGCAGAGGCGTCCCAGACTGTGTGTGACAATGAGATTGTGAGTGTGCCAGAGAGAGGACGCATTGACACCGTCACACGAAGTCTGCTTGTACAGGCTGAAGGAATCAAAAAGGCAAAGACCAACAGCTGGTTACTGTGTCCAAAGGGGGACAGTCTTTTAGAGGAAATAGATCTGACTCTTCCTAAAGACATGATAGAGGGATCAGTCACATCCTCTGTTTCCGTCATtgGAGACATAGTGGGTCGTTCACTGAAAAAACTTCACAGAACATTATGGAGGATTTACAGATCTGGTAACCAAAACATAGCTATTCTTTCTCCCAGTATTTACATTCTGCAGTACCTGGAGAACACAAAGCAGCTCACCTCAGCCATCCGAGAGAAAGCCAGCAGCTTCCTTAAGAGCGGATACCAGAGACAACTGAAATACAGGCATAGAAATGGAGCATACAGCACATTTGGCAATGGAAAGGGGAATGCATGGTTGACTGCCTTTGTCCTGaagtcttttgtcaaagcacagaaatacatatatatagatCCACAAATTATTAAGAGTGCAAAGAAGTGGTTAATAGGTACACAGGATCCAGAAGGCTGTTTCATCCAGCATGGAAGACTATTCAACAACAGACTGAAGGGTGGAGTCAGTGATCATGTGACAATGACGGCCTACATTACTGCATCACTGCTTGAACTGGAAACTTCAGTCACAGATCCTGTCATCATTAAAGGTTTGTCATGCTTGAGGTCCGTCATCAAAGACGTCAAAAACACTTACACCACTGCTCTGCTGGCCTACACTTTCAGTCTGGCTAGAGACACCAACACTCGACAGCAGCTTTTCAACAAACTGGAGGATCTTGCTATTTCAGATGGTCCTCTTGTCCACTGGTCTCAGTCTGCATCTGCTGATGACTCTGATTCTCTGGATGTGGAGATCAGCTCATATGTGCTGCTAGCTGTTCTCACTGCAGATTCACTCACTACAGCTGATCTGGGCTTTGCTAACAGGATTGTCAGCTGGCTTGTGAAGCAGCAGAATGCCTATGGAGGATTCTCCTCCACACAGGACACAGTGGTGGCTCTTCAGGCTCTGTCTTTGTACGCCACCAAAGTGTTCAGCTCTGACGGCTCCAGCACAGTGACTGTACAGTCAGCAGGAGACTCTCACTACTTTAATGTCAATCAAGACAACAAGTTAGTCTACCAGGAGAAGCAGCTGGCCAATGTGCCGGGCAAATACAAAATTGAAGTCAAGGGCTCAGCCTGTGTGTCTGTGCAGATGGCTCAGTTCTACAACATTCTCACTCCTAAAGAAGTTAAAACATTGAGCATTGATGTTAAGATTGAGGGAGACTGCAAGAAAACCTTTGGAAATAAACTATTGTTAGAATTCACTGTGAAttatgATGGTCCTCATGAAACAACCAACATGTTGATTGTGGATGTTAAACTCTTATCTGGATTCACAGCTGATGATACAACAATGGTGTTTCTTCAGGTTTTTATGTACCACTTGTGGAGCAGGTCGATTATAAAGACGATCATGTCATTGTGTATCTGAAGGAGGTCCCCAAACATTTTCCTGTGAATTACCAGATACAAATGAAACAGGTTCTACATGTGATGAATCTCAAGCCAGCTGTGATTAAAGTGTATGATTACTACCAAACAAGTGATCAGTCAGAAACTGAATACTACTTCCACTGTTAACGAAGCTGCGCAAATAAAGCTTGAAttcaaatgtatatttgtttattctttaT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000142311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018062 lncRNA downstream 131646 20944627 ~ 20948180 (-) False XLOC_009177
TCONS_00018053 lncRNA downstream 240606 20836176 ~ 20839220 (-) False XLOC_009175
TCONS_00018038 lncRNA downstream 614507 20464488 ~ 20465319 (-) True XLOC_009169
TCONS_00018032 lncRNA downstream 734094 20344912 ~ 20345732 (-) True XLOC_009166
TCONS_00019145 lncRNA downstream 798033 20264703 ~ 20281793 (-) True XLOC_009164
TCONS_00019146 lncRNA upstream 245973 21355581 ~ 21369502 (-) False XLOC_009185
TCONS_00019148 lncRNA upstream 248756 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019147 lncRNA upstream 248756 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019149 lncRNA upstream 255353 21364961 ~ 21369494 (-) False XLOC_009185
TCONS_00019150 lncRNA upstream 255353 21364961 ~ 21369561 (-) False XLOC_009185
TCONS_00018067 mRNA downstream 65556 20991821 ~ 21014270 (-) False XLOC_009179
TCONS_00018068 mRNA downstream 65811 20991952 ~ 21014015 (-) True XLOC_009179
TCONS_00018063 mRNA downstream 123442 20944646 ~ 20956384 (-) False XLOC_009177
TCONS_00018064 mRNA downstream 125274 20948384 ~ 20954552 (-) False XLOC_009177
TCONS_00018061 mRNA downstream 130134 20940904 ~ 20949692 (-) False XLOC_009177
TCONS_00018070 mRNA upstream 4357 21113965 ~ 21132480 (-) False XLOC_009181
TCONS_00018071 mRNA upstream 4359 21113967 ~ 21132480 (-) True XLOC_009181
TCONS_00018072 mRNA upstream 27438 21137046 ~ 21155657 (-) False XLOC_009182
TCONS_00018073 mRNA upstream 27545 21137153 ~ 21155641 (-) True XLOC_009182
TCONS_00018074 mRNA upstream 47977 21157585 ~ 21165237 (-) True XLOC_009183
TCONS_00018066 other downstream 101578 20960069 ~ 20978248 (-) True XLOC_009178
TCONS_00018065 other downstream 123372 20948693 ~ 20956454 (-) True XLOC_009177
TCONS_00018048 other downstream 249701 20828421 ~ 20830125 (-) True XLOC_009174
TCONS_00018047 other downstream 268415 20809709 ~ 20811411 (-) True XLOC_009173
TCONS_00018046 other downstream 279996 20798128 ~ 20799830 (-) True XLOC_009172
TCONS_00018076 other upstream 412195 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018099 other upstream 1151273 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018101 other upstream 1611157 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018102 other upstream 1845409 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018142 other upstream 3049345 24158953 ~ 24159067 (-) True XLOC_009227

Expression Profile

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