RNA id: TCONS_00018053


Basic Information

Item Value
RNA id TCONS_00018053
length 797
lncRNA type retained_intron
GC content 0.47
exon number 4
gene id XLOC_009175
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20830146 ~ 20839910 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTAATGTTCATATCTCAGCGTTCAGCTCATTGAATCACAGACCAGACTGACTCTTAACGATGTCTCGAGAGCAGCTTGCTGTTCAACAGGCCAGAAAGGCGTTCTTGACCGGAAGATCCAAATCCCTGGACTACAGAATCAAACAACTTAAAAACCTAAGTCGATTCATTAAAGAAAGAGCAGCAGACATCACTAATGCCCTGAGAAAAGACCTCTATAAGGTGAATCAAAATTGCCAGCTCTGCATATTCTGTTTGGATGATTAACTGGGTTGAACGTAATGTCTGTGTTTTTGTAGAGCGCAAACTCAACACAGTTGTTTGAGATCCTTGGCTTGGAGGGAGAGATCAATCTGGCTGTCAGCAAACTGGCTGAGTGGGCAGCACCTCGTCCTGTGAATAAAAACCTTCTGACCATCTCAGACGATGTGTTCCTACAGCCAGAGCCTCTTGGTGTTGTGCTCATCATTGGGGCGTGGAACTATCCAATAGCAGTTACCCTGCAACCCCTTGTTGGTGCCATTGCTGCAGGTAATGCTGTAGTGGTGAAGCCATCAGAAGTGAGCTCGCACACAGCCAGCGTTATGGAGCTCATGTCTCTCTATCTGGATTCTGAGATGTATCAGGTGGTGACAGGAGGGGTTCCAGAGACTCAGGAGCTGCTGAAGCAGCGTTTTGACCACATCTTCTACACTGGAAACAGCACAGTGGGCAAACTGGTTATGGAAGCAGCTTCTCATCACCTCACACCAGTCACTTTAGAACTGGGTGGAAAAAGCCCCTGTTATATTGACAA

Function

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-74 Predicted to enable 3-chloroallyl aldehyde dehydrogenase activity. Predicted to act upstream of or within cellular aldehyde metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Sjogren-Larsson syndrome and arteriosclerosis. Orthologous to human ALDH3A1 (aldehyde dehydrogenase 3 family member A1) and ALDH3A2 (aldehyde dehydrogenase 3 family member A2).

Ensembl:

ensembl_id ENSDART00000139551

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018038 lncRNA downstream 370857 20464488 ~ 20465319 (-) True XLOC_009169
TCONS_00018032 lncRNA downstream 490444 20344912 ~ 20345732 (-) True XLOC_009166
TCONS_00019145 lncRNA downstream 554383 20264703 ~ 20281793 (-) True XLOC_009164
TCONS_00019144 lncRNA downstream 554961 20253743 ~ 20281215 (-) False XLOC_009164
TCONS_00018030 lncRNA downstream 596578 20238428 ~ 20239598 (-) True XLOC_009163
TCONS_00018062 lncRNA upstream 105407 20944627 ~ 20948180 (-) False XLOC_009177
TCONS_00019146 lncRNA upstream 516361 21355581 ~ 21369502 (-) False XLOC_009185
TCONS_00019148 lncRNA upstream 519144 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019147 lncRNA upstream 519144 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019149 lncRNA upstream 525741 21364961 ~ 21369494 (-) False XLOC_009185
TCONS_00018044 mRNA downstream 56552 20655873 ~ 20779624 (-) False XLOC_009171
TCONS_00018043 mRNA downstream 90663 20655873 ~ 20745513 (-) False XLOC_009171
TCONS_00018042 mRNA downstream 104538 20655873 ~ 20731638 (-) False XLOC_009171
TCONS_00018040 mRNA downstream 104879 20652686 ~ 20731297 (-) False XLOC_009171
TCONS_00018041 mRNA downstream 126887 20653180 ~ 20709289 (-) False XLOC_009171
TCONS_00018056 mRNA upstream 61407 20900627 ~ 20916251 (-) False XLOC_009176
TCONS_00018057 mRNA upstream 69182 20908402 ~ 20939579 (-) False XLOC_009176
TCONS_00018058 mRNA upstream 69243 20908463 ~ 20933574 (-) False XLOC_009176
TCONS_00018059 mRNA upstream 86000 20925220 ~ 20933577 (-) False XLOC_009176
TCONS_00018060 mRNA upstream 86271 20925491 ~ 20933621 (-) True XLOC_009176
TCONS_00018048 other downstream 6051 20828421 ~ 20830125 (-) True XLOC_009174
TCONS_00018047 other downstream 24765 20809709 ~ 20811411 (-) True XLOC_009173
TCONS_00018046 other downstream 36346 20798128 ~ 20799830 (-) True XLOC_009172
TCONS_00018045 other downstream 55060 20779412 ~ 20781116 (-) True XLOC_009171
TCONS_00018019 other downstream 1083202 19745731 ~ 19752974 (-) False XLOC_009156
TCONS_00018065 other upstream 109473 20948693 ~ 20956454 (-) True XLOC_009177
TCONS_00018066 other upstream 120849 20960069 ~ 20978248 (-) True XLOC_009178
TCONS_00018069 other upstream 240606 21079826 ~ 21109608 (-) True XLOC_009180
TCONS_00018076 other upstream 682583 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018099 other upstream 1421661 22260881 ~ 22260997 (-) True XLOC_009200

Expression Profile

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