RNA id: TCONS_00018074


Basic Information

Item Value
RNA id TCONS_00018074
length 4015
RNA type mRNA
GC content 0.43
exon number 26
gene id XLOC_009183
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21157585 ~ 21165237 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATAACAAAAACAGGCTGTGCCATCCATAACTTTGGTGTATCAGTCTTTTTGAACTCCACACTAAAGGAGAGACTAAAAGATTCTCTTCATGTTGAGGCAGTGGTTACAGAAGAAGGAACAGagATCACCATGGCCAAATCTGAATCTGTACCTCTCACGTATGAAATTGGCAAAGTAAAAGTTATTGACCTGCCCAATACATATGAACATGGATCAGTCATAGAAGGAAAAATCAAACTTTTCGATTTTAAGGATGCTCCAATTCCAAACAAAGAGGTTTATCTTTTAGAGGGTGAAAACTGGTCCTCCAAACTGCTCCTAAATCTCACTACAGACAGTGATGGACTGGCCAGCTTCTCTCTTAATACATCTAGTCTTTCTAAAAAAGACATTTCTCTGATTGCAAATGTGTATCCAGATACCCGTTTTCGTCAGTACAAAACACCTTACTTCTCTAGAgataaaaaaacagttaaactcTTCCAGACCGCAACTCCATACTCCCCAACATTTAGTAAACTGATAATAGAGAATATTGAGCAGCCGATAAAcATTAATTTACTGCACTGGTCAGTTTATAACAGTGTCTTGTCCAAAGGAGTGATTGTTCATCATGGGTATGAGAAAGTTGAAGTGAAGTCTTCAAATGGAGTAGCAAGTGGCACAATGTCCTTCGAACTGTCTGTTGGTGCAGATGTGGCTCCTGTAGTGCGGATTCTAGCGTACTGTGTTCTGCCCAGTGAAAATATTATTGCCGCTAGCAAAAGTTTAGACAttgaaaaatgttttggtaataaGGTGTCTCTGCAGTTTTCTCCTGCTAAAGCAGTTCCTGGTGAGAAAAACACTCTCCAGCTCTCAGCTCAGCCTGGTTCACTGTGTGGCCTCAGTGCTGTTGATCAGAGCGTCCTGATCCTGGAGTCAGGAAAACGTCTAGATGCTGACAAGATCTTCAGCCTGCTGCCATTTCAGTATGTGTATTATCCTTACAGTGCTGAAGATGAGCAGCCGTGTCTGCCTGTGAGACCCCGTCGATCTGTGCTGACAGACAACGTCTATAACAGCTTAAAGAGTGTGGGGCTAAAAATGGCTTCAAATTTGGCTGTGCGAGTCCCTGAGTGTCTGTCATTCAGAGGCTTGACTTATCACAGATTCAGAGATATAGTGATGTATCATACCTCTGGTCGAGTGGGATTGGGGTCTTCAATAGAAAGTTCTACTTTTGATAATTCGGCAGTGACGATTCGGACCATCTTTCCAGAAACGTGGATCTGGGACCTTGCTGAAGTGGGTGACTCTGGATCAACTGAAGTTCCTGTCACAGTTCCTGACACCATCACCACTTGGGAGACGGAGGCCTTCTGTCTGTCCTCCACAGGTCTGGGTTTGGCTCCTCCCGCTCAGCTGACAGTATTCCAGCCCTTCTTCCTGGAGCTCTCTCTACCTTACTCCATCATCCGTGGGGAGATCTTTGAGCTCAAGGCCACTGTCTTCAACTATCTGTCCAAGTGCATCATGGTTAAAGTGAGTCCAGCTCCTTCCTCAGACTACACTCTCAAAGCCTCCTCTGATGATCAGTATTCATCCTGTCTCTGTGCTAATGGAAGACAAACCTTTAAATGGATCCTCACTCCTTCTGTTCTTGGAGTGGTGAATGTTACAGTCAGTGCAGAGGCAGAGGCGTCCCAGACTGTGTGTGACAATGAGATTGTGAGTGTGCCAGAGAGAGGACGCATTGACATCGTCACACGAAGTCTGCTTGTACAGGCTGAAGGAATTGAAAAGACCGAGACCAACAGCTGGTTACTGTGTCCAAAGGGTGACAGTCTCTCAGAGAACGTGGATCTGACTGTTCCTAAAGATGTGATAGAGGGATCAGCAAAATCCTCCGTTTCAGTCATTGGAGACATATTGGGTCGAGCACTGCAGAATCTTCATGGATTATTACGGATGCCGTACGGCTGTGGAGAACAAAACATGGCTGTTCTTTCTCCCAATATTTACATTCTGCAGTATCTGGAGAACACAAAGCAGCTCACATCAGCCATCCGAGAGAAAGCCAGCAGCTTCCTTAAGAGTGGATACCAGAGACAACTGAACTATAAGCATTTTGATGGGGCTTACAGCACATTTGGTTATGGTGATGGGAACACATGGTTGACTGCCTTTGTCCTGAGGTCTTTTGGCAAAGCTCAGAAATACACATTTATTGATCCACAAATTATTCAGAGTGCAAAGGATTGGTTAATAAGCAGACGGGATTCAGACGGCTGTTTTATCCAACAGGGAAGACTGTTTAACAACAGAATgaagGGTGGAGTGACTGATAATGTGACCATGACGGCCTACATTACTGCATCACTGCTTGAACTGGAAACTCCAGTCACAGATCCTGTTGTCACTAAAGGCTTGTCATGCTTGAGGTCTGTCATCGAGGATGTCAAAAACACTTACACCACTGCTCTGCTGGCCTACACTTTCAGTCTGGCTAGAGACACCAACACTCGACAGCAGCTTTTCAGCAAACTGGAGGATCTTGCTATTTCAGATGGTCCTCTTGTCCACTGGTCTCAGTCTGCATCTGCTGATGACTCTGCTTCTCTGGATGTGGAGATCAGCTCATATGTGCTGCTAGCTGTTCTCACTGCAGATTCACTCACTACAGCTGATCTGGGCTTTGCTAACAGGATTGTCAGCTGGCTTGTGAAGCAGCAGAATGCCTATGGAGGATTCTCCTCCACACAGGACACAGTGGTGGCTCTTCAGGCTCTGTCTTTGTACGCCACCAAAGTGTTCAGCTCTGACGGCTCCAGCACAGTGACTGTACAGTCAGCAGGAGACTCTCACCACTTTGATGTCAATCAGGACAACAAGTTACTGTACCAGGAGAAACAGCTGGCCAATGTGCCAGGCAAATACAGCATTGAAGTCAAGGGCTCAGCCTGTGTGTCTGTGCAGATGGCTCAGTTCTACAACATTCCCACTCCTACTGAAGCTAAAACATTAAGTATTGATGCTGAGGTTGAGGGAGATTGCAAGAAAACCTTTGGACAAAATCTAATGTTAAATGTCACTGTGACataTGATGGTCCCCAGAATAGAACTAATATGGTTATTGTGGACATTAAACTCTTATCAGGATTCACAGCTGATACATCAATGCTTAAAACTCAACGGCAGTCATTTGACTCTTTGGATTTTTTTGGGCACGCACCTGTGGAGCGGATTGATTCCAAAGATGATCATGTCCTTGTATATCTGGAAGAGGTTTTAAAAGAAGACCCAGTGAATCTCCAGATTGGACTGAATCAGATTATTCAAGTGAAGAATCTTAAGCCAGCTGTTATTAAAGTGTATGATTACTACCAGACAAGTGATCAGTCAGAGATGGAGTACTCGTCCCACTGTGAATGAAGATTCATGCTTCACTTCTGCAGCTTGGAAAAAGATGTTAAATACTCACTAAATGTTTAATGGTTGTATCTCAATCAGCACCCAAGCTCCTAGCTTAGCTCACTATACATTGGAACACACAGAGTGTGACATGAGAACGTACTTATACATCATCAAAACTGGAATTTAGAAACAACAGCAGaactaataatttatatatattatttttattaagatttaaaaGTACAATTTAGCTTAATACCTCGACTGTTTCATATACCAGCAACATTTCAACCAATAAACAGTTATACATTTTTGACTGATCGTTCCTATCCTGTCCAGCTATGTTCATTCATGTAAAAATATGTTGCATTATGGAACTTTTCAGAGTGTGAACACTTCAATGTGCTGTAAACATTTTGTGACTAAGACAGCACTTAAAATGGCTGACACCCTGATCAGTGCACTGACTACTTTACAATGTGCTGAGTGAGATGAGCCctacatttttagtagtttttcTTTATCCTGAGCAAAGTAATTTCCAACtttgtgtgtaaatgtacaaCAAAAGCAAATGCATGTAAACAAATCACTTTGAATGCAAATGATTAAAAGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157069

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018062 lncRNA downstream 209405 20944627 ~ 20948180 (-) False XLOC_009177
TCONS_00018053 lncRNA downstream 318365 20836176 ~ 20839220 (-) False XLOC_009175
TCONS_00018038 lncRNA downstream 692266 20464488 ~ 20465319 (-) True XLOC_009169
TCONS_00018032 lncRNA downstream 811853 20344912 ~ 20345732 (-) True XLOC_009166
TCONS_00019145 lncRNA downstream 875792 20264703 ~ 20281793 (-) True XLOC_009164
TCONS_00019146 lncRNA upstream 190344 21355581 ~ 21369502 (-) False XLOC_009185
TCONS_00019148 lncRNA upstream 193127 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019147 lncRNA upstream 193127 21358364 ~ 21369502 (-) False XLOC_009185
TCONS_00019149 lncRNA upstream 199724 21364961 ~ 21369494 (-) False XLOC_009185
TCONS_00019150 lncRNA upstream 199724 21364961 ~ 21369561 (-) False XLOC_009185
TCONS_00018072 mRNA downstream 1928 21137046 ~ 21155657 (-) False XLOC_009182
TCONS_00018073 mRNA downstream 1944 21137153 ~ 21155641 (-) True XLOC_009182
TCONS_00018070 mRNA downstream 25105 21113965 ~ 21132480 (-) False XLOC_009181
TCONS_00018071 mRNA downstream 25105 21113967 ~ 21132480 (-) True XLOC_009181
TCONS_00018067 mRNA downstream 143315 20991821 ~ 21014270 (-) False XLOC_009179
TCONS_00018075 mRNA upstream 55507 21220744 ~ 21239416 (-) True XLOC_009184
TCONS_00018077 mRNA upstream 375773 21541010 ~ 21669618 (-) True XLOC_009188
TCONS_00018078 mRNA upstream 508217 21673454 ~ 21678634 (-) True XLOC_009189
TCONS_00018079 mRNA upstream 519198 21684435 ~ 21692630 (-) True XLOC_009190
TCONS_00018080 mRNA upstream 529151 21694388 ~ 21702317 (-) True XLOC_009191
TCONS_00018069 other downstream 47977 21079826 ~ 21109608 (-) True XLOC_009180
TCONS_00018066 other downstream 179337 20960069 ~ 20978248 (-) True XLOC_009178
TCONS_00018065 other downstream 201131 20948693 ~ 20956454 (-) True XLOC_009177
TCONS_00018048 other downstream 327460 20828421 ~ 20830125 (-) True XLOC_009174
TCONS_00018047 other downstream 346174 20809709 ~ 20811411 (-) True XLOC_009173
TCONS_00018076 other upstream 356566 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018099 other upstream 1095644 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018101 other upstream 1555528 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018102 other upstream 1789780 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018142 other upstream 2993716 24158953 ~ 24159067 (-) True XLOC_009227

Expression Profile

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