XLOC_009195


Basic Information

Item Value
gene id XLOC_009195
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 21900306 ~ 21904226 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018093
GACGGCTCCAGTAGCAGGGCATAATAGCTGTGCTCCAGTGCCCTCTTTGAGCACAGAGCTGGCGCCTGCCCTCTGGCTCTCCACTGATACCATCTCAGTCATCTCATCAGCCAGAAGAGACACTCGCTCCACAACACTGCAATGCACAGAAAATACAGCAGAGCGAGGCCTGACCCTCGGCCGCCAGTCTGAGAAGCCTCAAGCTCTCCCTCATCCGCGCTCTGAAGCCCCTCTGCATGGCCTGCTTGGCCTTCATCTCCACCAGCAGGATCTGCATCTGACTGTCCAGCAGCTGAATCATCTGATTGGCCATCGCTCTGCGCCGCACCATCTCCTGCTCTACTTGCCTCTCCAAACCTTCGCCTTTCCCTCCAAACATCCTCCAGCCAGGGTGGAGCTCCTTCAGCTTCCCCTGCAGCCCCTGGTAGAGTTGCTTCACCTACATCGGTGCATGATTACTACTCAATAAGACAAGCTGACAAAAGAATGCTGTAATTCACACTTTACCAGAGGGAAGTAATAATTCACTACATACAGTAGTATCATCGTACTGAACAGTGAAACAAGAGAGACGGTTAATTACAACGGAGCAATTCAATATGGATAAAAACATGTTTGAACTGATATTTGAAGCTCTGATATTTGTTCCCGTTGAGTCTCACCTCTCCTTTGAGCTGTCCAAGGCGAACGGTGACCGACACGCTGTGCTTGAGCAGGATTTCATAGAAGGTGCTGGAACTGAAGGCTTCCAGATCCACTTGCTCTTCATAGTCCCAGAATTCACTCGATACCAGAGCCACTGCTGTGGGAAATAAAGGAATAAAGGAAAGGAATAAAATGGAAAATAATGGATTTGtaatacttattaataataatttatcaacaatgaataaatggaaagtaaagtaaaaaaaactaaaatccaTATTTCACGACTGGAAtacaacttaaaatcaactatatatactgtatacagttgaagtcagaattattagcccaccacaattattagccaccctcattatttttcccccaatttctttttaatgaagTGAAGATtgttttcgacacatttctaaacatgttagttttaataactcatttctaataactgttttattttatctttgccatgatgacagtaaataatatttgactagatattttgcaagacacttctatacagcttaaagggacatttaaaggcttaactaggtaatttaggttaactagtcaggttagggtatttaggcaagttactgtataatgatagtttgttttaaagactatcgaaaaaatatatagctttaaagggttaataattttgaccttactgtgagcatttccttgctctgttaaacatctattgcgaaatatttaaaaaaataataataattcaaaggggggctaaaaattctgacttcaactgtatatatatagaaCCATGCATCATTTTTAGTAGCCAACAACTTgaaggggctctattttaacaatctagtcGCAGAGTGTAAGCAGAGCAcagcgc

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007267 cell-cell signaling biological_process
GO:0046888 negative regulation of hormone secretion biological_process
GO:0060986 endocrine hormone secretion biological_process
GO:0044060 regulation of endocrine process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018093 True 1525 lncRNA 0.41 2 21900306 21904226

Neighbor

gene id symbol gene type direction distance location
XLOC_009194 zgc:162608 coding downstream 22310 21875545 ~ 21877996 (-)
XLOC_009193 laynb coding downstream 47315 21842638 ~ 21852991 (-)
XLOC_009192 sik2b coding downstream 62791 21779681 ~ 21837515 (-)
XLOC_009191 si:dkey-40g16.6 coding downstream 197989 21694388 ~ 21702317 (-)
XLOC_009190 sdhdb coding downstream 207676 21684435 ~ 21692630 (-)
XLOC_009196 drd2a coding upstream 142331 22046557 ~ 22074315 (-)
XLOC_009197 scn3b coding upstream 229613 22133839 ~ 22147860 (-)
XLOC_009198 NA coding upstream 256699 22160925 ~ 22161978 (-)
XLOC_009199 si:ch211-286b4.4 coding upstream 260323 22164549 ~ 22251089 (-)
XLOC_009200 CR936967.1 coding upstream 356655 22260881 ~ 22260997 (-)
XLOC_009187 BX663519.1 non-coding downstream 360030 21521803 ~ 21540276 (-)
XLOC_009186 NA non-coding downstream 392770 21493852 ~ 21507536 (-)
XLOC_009185 NA non-coding downstream 530745 21355581 ~ 21369561 (-)
XLOC_009180 CR626907.2 non-coding downstream 790698 21079826 ~ 21109608 (-)
XLOC_009178 BX548078.1 non-coding downstream 922058 20960069 ~ 20978248 (-)
XLOC_009202 NA non-coding upstream 684278 22588504 ~ 22594885 (-)
XLOC_009203 CR388121.1 non-coding upstream 816539 22720765 ~ 22720881 (-)
XLOC_009204 BX572079.1 non-coding upstream 1050791 22955017 ~ 22955132 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G286480 NA non-coding CI01000072 null 4173619 ~ 4190370 (+)