XLOC_009206 (ccdc153)


Basic Information

Item Value
gene id XLOC_009206
gene name ccdc153
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23200217 ~ 23206583 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018103
AAAGATGCAGGACTAGTAGGATTTTTACATCATGCCGCCAAAGAAGAAAGGAAAAGGAGGCAGCAAAAAAGAAAAGACTAAAAAAAGCACGCCAGAAAAGGATGATGGACTTACAGAGAAGTACAGGAGAAGTGTCTTAGATGTGTCTGTTTTAAAGGAACACCTTGCACTGAGGAGTGGTGTGGCGCGTCAGGCCACAGCAGTGAGAGATGAGCTGAAGAGTCAAGTCAGAGATCTGGAGCAGCTGCTCAGTCAGGAACGATCAGACATGAAGGACATCACTGCAGATCTCAACCGTCAATACAAGTCCATGGAAACAGACCTGCAGTCTAAAGCGGATAAACTAGAAGCAAGTGTGGACTTGCTTGAGAAGCAGCTCGCCGAGTGTCAGGTTGAATTAAAATCGGAAAGAGAGCTGCGAGAAAACACAGAAGCAGAAAAAGACGCCATCATTTCTGACCTCCAGAGCAAACTGGACAGTATGGAGCGAGAGTGTGAGAAAATACTGCACGGCTGTCTGGACAGTTTGCTCTCTCACCTGGCAGACACGCGGATGAAGTGGGAAGAACAGAGCACTGTCATTCATCAAGACGTCAAGGATATGCTTCGTGAATTTGGGATAAATCCACTTCACATGTAAGGACACCTTCAGATGAGCACTGAGAACAGAAAAGAAGCAGGAGCAAGACATCTGACCTTTGACAGCTAAGCAATTGCATGTATATTGGGCTCTGGAGACCTCTTGTGTATTCTATTTGTAATTAGATTACAGTTAGAGCACTGCTGTTACATTCTTTTGTTATTGAAGATTTGgacaaacatataaaaaaaatgttttaa
>TCONS_00018104
ATTAACTTTTCCCTCCGTCCGAAAGATGCAGGACTAGTAGGATTTTTACATCATGCCGCCAAAGAAGAAAGGAAAAGGAGGCAGCAAAAAAGAAAAGACTAAAAAAAGCACGCCAGAAAAGGATGATGGACTTACAGAGAAGTACAGGAGAAGTGTCTTAGATGTGTCTGTTTTAAAGGAACACCTTGCACTGAGGAGTGGTGTGGCGCGTCAGGCCACAGCAGTGAGAGATGAGCTGAAGAGTCAAGTCAGAGATCTGGAGCAGCTGCTCAGTCAGGAACGATCAGACATGAAGGACATCACTGCAGATCTCAACCGTCAATACAAGTCCATGGAAACAGACCTGCAGTCTAAAGCGGATAAACTAGAAGCAAGTGTGGACTTGCTTGAGAAGCAGCTCGGTGAGTCCATTTATTAACACATTCAAATTCTTGTGCTTATCATGATAGGCAGTGTGTGCTGTAACCAAACACATGCTCTCCACTGACATACTGATGACAAACAAGGCCTCTGTTTGATTAGCCGAGTGTCAGGTTGAATTAAAATCGGAAAGAGAGCTGCGAGAAAACACAGAAGCAGAAAAAGACGCCATCATTTCTGACCTCCAGAGCAAACTGGACAGTATGGAGCGAGAGTGTGAGAAAATACTGCACGTAAGTGATTATAATAAGCGTCCAAAATGCATACATTAGATGCTTGAATGGATGACAAATTTTAATAGCGTTACATGGCGTAAAATGGGCCTGGTGACATTTCAAAGTTGTGACAGAGTAATCTACCTCAACCAAATGAGGTGTA

Function

symbol description
ccdc153 Orthologous to human CCDC153 (coiled-coil domain containing 153).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-16 Orthologous to human CCDC153 (coiled-coil domain containing 153).

Ensembl:

ensembl_id ENSDARG00000077161

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018103 False 840 mRNA 0.44 6 23200217 23206562
TCONS_00018104 True 798 lncRNA 0.43 4 23200775 23206583

Neighbor

gene id symbol gene type direction distance location
XLOC_009205 NA coding downstream 45957 23144954 ~ 23154260 (-)
XLOC_009204 BX572079.1 coding downstream 245085 22955017 ~ 22955132 (-)
XLOC_009203 CR388121.1 coding downstream 479336 22720765 ~ 22720881 (-)
XLOC_009202 NA coding downstream 605332 22588504 ~ 22594885 (-)
XLOC_009201 zgc:194114 coding downstream 896024 22302724 ~ 22304193 (-)
XLOC_009207 mcamb coding upstream 65279 23271862 ~ 23342752 (-)
XLOC_009208 c1qtnf5 coding upstream 162437 23369020 ~ 23376541 (-)
XLOC_009209 kmt2a coding upstream 175616 23382199 ~ 23420170 (-)
XLOC_009210 ube4a coding upstream 217089 23423672 ~ 23443937 (-)
XLOC_009211 pdzd3a coding upstream 246279 23452862 ~ 23467750 (-)
XLOC_009200 CR936967.1 non-coding downstream 939220 22260881 ~ 22260997 (-)
XLOC_009227 CU313324.1 non-coding upstream 952370 24158953 ~ 24159067 (-)
XLOC_009228 NA non-coding upstream 1355238 24561821 ~ 24563061 (-)
XLOC_009230 NA non-coding upstream 1385742 24592325 ~ 24618905 (-)
XLOC_009234 NA non-coding upstream 1694968 24901551 ~ 24927093 (-)
XLOC_009236 NA non-coding upstream 1761509 24968092 ~ 24974112 (-)

Expression


Co-expression Network