XLOC_009211 (pdzd3a)


Basic Information

Item Value
gene id XLOC_009211
gene name pdzd3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23452862 ~ 23467750 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018112
AGAAGGATCATGAGATTCACCGCAGaaACCGTGGAGGCACCAGATTTACCGAAAAAGTTCACCTTCAACCCGAAAGAAGGCATTGACAATCCTGCTTTGGTGATCTCCGATGACAAAGAGCCAGATGTGCACCCGCGGTTGTGTGTCCTGAGGCGGGAGGAGGGCCAGGGCTTCGGCTTCTACCTGAGCCGGGACGCGGGTCGCTGCAGAGGGCATGTGGTGCGGCAGGTGGAGCCTTGGAGCAGCGCCGAACGGGCTGGACTGAGGATCGGGGACCATGTTTTGGAGGTCAATGAGGACTTTGTGGATGACAAGGAGCACTCGACTGTGGTGCTGAAGGTGCAGGCGTCTGGATTAAAGCTCTATCTGTTAGTTCTGAGTGCTCAAGATTATGAGTTTGCAGTTTCAGAGGGAAGAGACCTTTTGTCCGTTGCCAGATCTTATCGTCCTGAGGGCTGCTCTCGCCCGCGGTTATGCCACATCACTAAAGAGCCTGGCTGTGGTTTGGGCCTCAGCATCATTCCCATTGAAGGAGCGCGAGGCCGATATCGCCTGAACCCAGTGACTGATGGTCCAGCGGAAAGAGCAGGCATCCAGAATGGAGACAGGCTCATCTGGATCAATGGAGTCTCGATTTCTGTCATCTCATATGCAGCACTGGCCAAAATGGTGAAGAAATGTGAAAAGCATCTGACCGTCTTGGTAATTGACAGCAGGAGTGAAGAGATTTATAATCGCATGGGATTACCCATAATTCCTGCTTTTGCCGAAACCCATAATCTGCCCTACAGACCAAAAACACTCCACCTGACTCAAGGACCACAGGGATACGGCTTCCTCTTAAGGCAAGAGAAGTTACGATCAGGACGCATTGCTCATATATTGCGAGAGATCGACCCCTGCAGCCCAGCTGAGACTGCAGGAATGGAGGATGGAGAAATTGTGCTCGCTGTGAACGGAGAGCAGGTGGAGGATGCAGAGCATGAGGGCATCGTCAGCAAAATACGACAAAGCGGCCAGCAGGTCACCCTCACCACCATCTCCATCGCTGGCAGAGACTTTTACACACAGCTGGCAATGTCTCCATTGCTGTTCTATGACGAGCACATACCAAAATGTGAACCGTTCGCTACACCGGCCCTAGAACATCCTGAGGGACACCAAAATCCACCGCAACCTCGACTTTGTGAGCTTCATAAGGAGGGTACAGGATTCGGCTTCAACCTGGGCTGTGTTGAGAATAAGCCTGGGACTTATATCGGCCAGGTGGTGTCGGGGAGCACAGGAGAAAGAGCTGGCCTGCGTAAATGGGATGTTTTGATTGAAGTGAATGGCCAGAATGTGGAAGACGAGTATTTTGATGAAGTGGTGAGACTGATAACAGGAGGAGGAACACCtctcaggctgctggtggtggatGGACTTCAATATGACAAATTAAGAAACACCAGGCAGACCATAAATTTGGGACTTAATAACAAGGTTCCAGATGCTTCACAGGACGATTTTGTGTGAATGTAGTAGTCAGGT

Function

symbol description
pdzd3a Predicted to enable protein-membrane adaptor activity. Predicted to be involved in protein localization to plasma membrane. Predicted to act upstream of or within ion transport and receptor guanylyl cyclase signaling pathway. Predicted to be active in apical plasma membrane. Orthologous to human PDZD3 (PDZ domain containing 3).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006811 ion transport biological_process
GO:0007168 receptor guanylyl cyclase signaling pathway biological_process
GO:0016324 apical plasma membrane cellular_component
GO:0030251 guanylate cyclase inhibitor activity molecular_function
GO:0043495 protein-membrane adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080430-1 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in protein localization to plasma membrane. Predicted to act upstream of or within ion transport and receptor guanylyl cyclase signaling pathway. Predicted to be active in apical plasma membrane. Orthologous to human PDZD3 (PDZ domain containing 3).

Ensembl:

ensembl_id ENSDARG00000040568

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018112 True 1530 mRNA 0.51 11 23452862 23467750

Neighbor

gene id symbol gene type direction distance location
XLOC_009210 ube4a coding downstream 8925 23423672 ~ 23443937 (-)
XLOC_009209 kmt2a coding downstream 32692 23382199 ~ 23420170 (-)
XLOC_009208 c1qtnf5 coding downstream 76321 23369020 ~ 23376541 (-)
XLOC_009207 mcamb coding downstream 110110 23271862 ~ 23342752 (-)
XLOC_009206 ccdc153 coding downstream 246279 23200217 ~ 23206583 (-)
XLOC_009212 nlrx1 coding upstream 275 23468025 ~ 23485752 (-)
XLOC_009213 abcg4b coding upstream 19980 23487730 ~ 23508214 (-)
XLOC_009214 hmbsb coding upstream 43657 23511407 ~ 23529945 (-)
XLOC_009215 si:dkey-182i3.11 coding upstream 76681 23544431 ~ 23546452 (-)
XLOC_009216 ckmb coding upstream 175968 23643718 ~ 23647078 (-)
XLOC_009205 NA non-coding downstream 298602 23144954 ~ 23154260 (-)
XLOC_009204 BX572079.1 non-coding downstream 497730 22955017 ~ 22955132 (-)
XLOC_009203 CR388121.1 non-coding downstream 731981 22720765 ~ 22720881 (-)
XLOC_009202 NA non-coding downstream 857977 22588504 ~ 22594885 (-)
XLOC_009200 CR936967.1 non-coding downstream 1191865 22260881 ~ 22260997 (-)
XLOC_009227 CU313324.1 non-coding upstream 691203 24158953 ~ 24159067 (-)
XLOC_009228 NA non-coding upstream 1094071 24561821 ~ 24563061 (-)
XLOC_009230 NA non-coding upstream 1124575 24592325 ~ 24618905 (-)
XLOC_009234 NA non-coding upstream 1433801 24901551 ~ 24927093 (-)
XLOC_009236 NA non-coding upstream 1500342 24968092 ~ 24974112 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_03324124_03330240 PDZD3, PDZD3A coding CI01000072 null 3324124 ~ 3330244 (+)