XLOC_009210 (ube4a)


Basic Information

Item Value
gene id XLOC_009210
gene name ube4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23423672 ~ 23443937 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018109
ATGACAGACCAGGGCAATAACAATCAGAACATCTCACAAAACCCTTTCGCAGCACTCTTCAGTTCAGTTGCTGACGCAAAACAGTTTGCATCTGACCAAAAGCAACAGCGTCCAACTGAGCAGCAATCAGTAGATTCAGGAGAGAGCCAGTCTGAGTCAGAAAACTCTGCGTCTGAAAGCATTGATGAGAATGATGACTCAGTGGCGGAGATCAGCCGATCGTTCCGCTCACGACAGGAGCTCTGTGAACAGCTCAATGTCAACCACATGATCCAGAGGATCTTCCTCATCACTCTGGACAACAGTGATCCGAGTCTAAGAAGTGGCAATGGCATCCCACCACGCTGTGTTTACCTTGAGGAAATGGCAGCTGATCTTGATGGTCAGGACTGGCTTAACATGGACACCATAGAGCAGGCTTTGTTCAACAGGCTGCTTTTGCAGGAGCCAGGAAACCATCTCATTTACATGACCTCCTGTAGTGTAGTGAATCTCTCGGCAGATCGAGACGCTGGAGAGAAACGTGCCATACCTTACCTTTACGCCTGCTACCAAAGAGCTAAAGAGGAGATCACTAAAGTCCCTGAGAAACTGTTGTCATTTGCTGTGCACTGCAAAAACCTGACCGTGTCCAATGCACGAACTGTGCTGCTGACCCCAGAGATCTACATCAGTCAGAACGTTTACGAGCAGCTTCTGGACCTGTTGCTGGAGGCTGTCAGAGGAGCCCAGTTTGAAGAGGTTGTGGAGTTTTTAGAGGAGGTCATTGCTAGCCTGTTGGCTGACCAAGAAGTGCGGACCTTTGGGGAGGTAATGGTGCCAGTGTTTGATATTTTCCATGGCCGGGTTAAAGACCTAGACCTCTGTCAGCTGCTGCTGTTTTCCTACCTGGAAATTCTCCTGTACTTCAGTCGACAAAAGGACATTGCTAAGGTTTTAATGGAGCACATTCAGCCCAAAGACCCTAACAATGGGATTCAGTATCAGAAAACACTTCTGGGAGCCATCCTTAATATTTCATGTCTGCTGAAAACTCCTGGTGTGGTTGAAAACCATGGCTTTTTCCTGAATCCATCTCGCTCCAGCCCACAGGAATTGAAGGTTCAAGAGTCAAATATACACCAGTTTATGGGGCAGTTTCATGATAAGCTCTATCAGATCCTGAAAAACTTGCTCCAGCAGTCCGGCGAGACTCGCCACCTGCTGCTCTCGTGGCTGGGTGGCTGCCTGCAGGCCAACATGGGTCGGGCCAAAATCTGGGCAAACCAGATGCCCGAGATATTCTTCCAAATGTATGCATCGGATGCATTCTTCTTAAATCTGGGAGCCGCTCTGCTCAAGCTCTGCCAGCCGTTTTCTCGACCCTACTCTCCTAAACTCCTGACCTTTAACCCCACATACTGCTTGCTTAAGGAGCTGAGCGAAGAAGAGCGGCGTAACAGAAACGTGCATGCTAGAGGTCTGGACAAGGAGACATGTCTGATACCTGTGCCCCCTCAACAAACGGTTGAATTTGCCCAATCATACAGCCTTCTGACAGAAAACCTCATTCTTACACAACTCACCCTGTACCTTGGCTTCCATAGACTTCATGATCAGATGGTGAAGATGAATCAGTCTCTGCACCGGCTCCAGGGGACGTGGCGGGACACGCAGCTCAGTGGAGGCCCAGCAGCAGCAGAGCTGCGGGAACAGTTTGAACACCTTATGACCGTCTATCTCTCAACCAAGGCTGCAACCACACAGCCCACCATGTTGCAGAACTGCCTCAACCTCCAGGCCTCCTGCGCCGCCCTGCTGGTTCAGCTCAGCCTGGGCAATCAGGGCCCTGAACACATTCCTCTCACCTTCCCTTTACCTTCACTAGAGAACAGCCTGCTTTGCTATGTGCCAGAGTTCTTTGCTGAAAACATGGGTGATTTCTTCATATTCCTGCGCCGCTTTGCTGATGAGGTGTTGGAGTCCTCTGCGGAAAGCTTAGAACACGTCCTGACCTTCATCACTGTGCTCATGGGCAATGTTGATAGAATGAAGAATCCTCATTTGCGGGCAAAGTTGGCAGAGGTCCTTGAGGCTGTGATGCCCCATATGGAGACTCTGTCACCTGGCGCTGCCCAACCTATCATGTTTCAGCGCCAAAGGGTTTTCAGCTCATATCGGCACGCGCCCCAACTCGCTGAAGCCCTTATTACAGTGTTCGTGGATATAGAGTTCACCGGTGATCCACATCAGTTTGAGCAGAAGTTTAATTACAGGAGGCCAATGTACGCCATTCTGAAGTACATGTGGGGAGAGAAGAGTTACAGAGAGAGCATTAAGAATCTTGCCGACTATGCCTCTGAAAACCTTGAAGCCATGAATCCACCACTCTTCCTTAGGTTTCTCAATCTCCTCATGAATGATGCCATCTTCTTACTTGACGAGGCTATACAGTACTTAAGTAAGATCAAAATCCTCCAGCTGGAGCGGGATCGGGGGGAGTGGGACAGTCTGGCCCCTGACGCCCGCAGAGAGAAAGAATCGAGTCTGCAGATGTTTGGACAGCTGGGTCGCTTCCACAACATCATGTCAAATGAGACCATTGGCACCTTGGCTTTCCTCACATCTGAGATAAAAGGTCTTTTTGTTCACCCCTTTCTTGCTGAGAGGATCATCTCCATGCTCAACTACTTTTTACAGCACCTGGTAGGCCCCAAAATGGGCGCCTTGAAGGTTAAGGACTTCAGTGAATTTGACTTCAAACCCCAACAGCTTGTGTCGGACATCTGTACTATTTACCTAAACTTGGGAGATGAAGAAAATTTCTGCGCCACCGTCCCAAAAGATGGAAGGTCATATTCACCCACTCTGTTCTGTCAAACTGTCCGCGTCCTCAAGAAAATCAACAAGCCTGGTGACATGATTATATCTTTCAGTCTCCTAGCagataaaattaagTCTCTTGCAGACAGGCATCAGCAAGAGGAAGAGACGTTCTCTGATGCTCCAGATGAATTTCTGGATCCCATTATGTCTACCTTGATGCTCGATCCTGTGCTTTTACCGTCTTCAAACGTCACAGTGGACCGCTCAACAATAGCACGACACTTACTAAGtGACCAGACAGACCCATTCAACCGCAGTCCGCTAACCATGGACCAGATCAGGCCCAACGAAGAGCTCAGGCAACAGATCATGAAGTGGCTTGCTGATCATAAGCAAAGCAACCAGCAAATGGGACCCAGTGGCTAAACCACACTACTCCCCTTCCCCCCCAGAACCCAGGCATGCTCTGTGTGACTAAACCATTCAGATGTTTCTGGCCTCACTCATGCCGCATTGAAACAAGAGCA
>TCONS_00018110
CTCCTGCACAGCACCATATCCGATTTACCACATTTCAACCTAAAACAAGACAGTGAAAATACTTGTTGATGGAGGACGTGCTCCAGGGAAATGACAGACCAGGGCAATAACAATCAGAACATCTCACAAAACCCTTTCGCAGCACTCTTCAGTTCAGTTGCTGACGCAAAACAGTTTGCATCTGACCAAAAGCAACAGCGTCCAACTGAGCAGCAATCAGTAGATTCAGGAGAGAGCCAGTCTGAGTCAGAAAACTCTGCGTCTGAAAGCATTGATGAGAATGATGACTCAGTGGCGGAGATCAGCCGATCGTTCCGCTCACGACAGGAGCTCTGTGAACAGCTCAATGTCAACCACATGATCCAGAGGATCTTCCTCATCACTCTGGACAACAGTGATCCGAGTCTAAGAAGTGGCAATGGCATCCCACCACGCTGTGTTTACCTTGAGGAAATGGCAGCTGATCTTGATGGTCAGGACTGGCTTAACATGGACACCATAGAGCAGGCTTTGTTCAACAGGCTGCTTTTGCAGGAGCCAGGAAACCATCTCATTTACATGACCTCCTGTAGTGTAGTGAATCTCTCGGCAGATCGAGACGCTGGAGAGAAACGTGCCATACCTTACCTTTACGCCTGCTACCAAAGAGCTAAAGAGGAGATCACTAAAGTCCCTGAGAAACTGTTGTCATTTGCTGTGCACTGCAAAAACCTGACCGTGTCCAATGCACGAACTGTGCTGCTGACCCCAGAGATCTACATCAGTCAGAACGTTTACGAGCAGCTTCTGGACCTGTTGCTGGAGGCTGTCAGAGGAGCCCAGTTTGAAGAGGTTGTGGAGTTTTTAGAGGAGGTCATTGCTAGCCTGTTGGCTGACCAAGAAGTGCGGACCTTTGGGGAGGTAATGGTGCCAGTGTTTGATATTTTCCATGGCCGGGTTAAAGACCTAGACCTCTGTCAGCTGCTGCTGTTTTCCTACCTGGAAATTCTCCTGTACTTCAGTCGACAAAAGGACATTGCTAAGGTTTTAATGGAGCACATTCAGCCCAAAGACCCTAACAATGGGATTCAGTATCAGAAAACACTTCTGGGAGCCATCCTTAATATTTCATGTCTGCTGAAAACTCCTGGTGTGGTTGAAAACCATGGCTTTTTCCTGAATCCATCTCGCTCCAGCCCACAGGAATTGAAGGTTCAAGAGTCAAATATACACCAGGTGagcgaaaacaaaacaaaacaaaagctttgTGACATTAAGTGAGCCGCATAACCACTTTCATTTCTT
>TCONS_00018111
AAAAAGAGTCTGCAGGACTGTCTGAAAAGACATTGAAAAGAGCAGAACAGCATTTCAAACTGCAGCAGACCTCATAATAAAAAAGCTAACGCCTGAAGACATCTGGCAAGACTTTGAACCAAAGAAAAGGGAGAGGGAGGGagatagaaaaaaaacattgaaataaacaGTAGTGTATCGTCCACTTCTGATGACGTCACACAACGCGTAGGATCTGGATCTCCTGCACAGCACCATATCCGATTTACCACATTTCAACCTAAAACAAGACAGTGAAAATACTTGTTGATGGAGGACGTGCTCCAGGGAAATGACAGACCAGGGCAATAACAATCAGAACATCTCACAAAACCCTTTCGCAGCACTCTTCAGTTCAGTTGCTGACGCAAAACAGTTTGCATCTGACCAAAAGCAACAGCGTCCAACTGAGCAGCAATCAGTAGATTCAGGAGAGAGCCAGTCTGAGTCAGAAAACTCTGCGTCTGAAAGCATTGATGAGAATGATGACTCAGTGGCGGAGATCAGCCGATCGTTCCGCTCACGACAGGAGCTCTGTGAACAGCTCAATGTCAACCACATGATCCAGAGGATCTTCCTCATCACTCTGGACAACAGTGATCCGAGTCTAAGAAGTGGCAATGGCATCCCACCACGCTGTGTTTACCTTGAGGAAATGGCAGCTGATCTTGATGGTCAGGACTGGCTTAACATGGACACCATAGAGCAGGCTTTGTTCAACAGGCTGCTTTTGCAGGAGCCAGGAAACCATCTCATTTACATGACCTCCTGTAGTGTAGTGAATCTCTCGGCAGATCGAGACGCTGGAGAGAAACGTGCCATACCTTACCTTTACGCCTGCTACCAAAGAGCTAAAGAGGAGATCACTAAAGTCCCTGAGAAACTGTTGTCATTTGCTGTGCACTGCAAAAACCTGACCGTGTCCAATGCACGAACTGTGCTGCTGACCCCAGAGATCTACATCAGTCAGAACGTTTACGAGCAGCTTCTGGACCTGTTGCTGGAGGCTGTCAGAGGAGCCCAGTTTGAAGAGGTTGTGGAGTTTTTAGAGGAGGTCATTGCTAGCCTGTTGGCTGACCAAGAAGTGCGGACCTTTGGGGAGGTAATGGTGCCAGTGTTTGATATTTTCCATGGCCGGGTTAAAGACCTAGACCTCTGTCAGCTGCTGCTGTTTTCCTACCTGGAAATTCTCCTGTACTTCAGTCGACAAAAGGACATTGCTAAGGTTTTAATGGAGCACATTCAGCCCAAAGACCCTAACAATGGGATTCAGTATCAGAAAACACTTCTGGGAGCCATCCTTAATATTTCATGTCTGCTGAAAACTCCTGGTGTGGTTGAAAACCATGGCTTTTTCCTGAATCCATCTCGCTCCAGCCCACAGGAATTGAAGGTTCAAGAGTCAAATATACACCAGGTGagcgaaaacaaaacaaaacaaaagctttgTGACATTAAGTGAGCCGCATAACCACTTTCATTTCTT

Function

symbol description
ube4a Predicted to enable ubiquitin-ubiquitin ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBE4A (ubiquitination factor E4A).

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0034450 ubiquitin-ubiquitin ligase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070410-21 Predicted to enable ubiquitin-ubiquitin ligase activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent ERAD pathway. Predicted to act upstream of or within protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBE4A (ubiquitination factor E4A).

Ensembl:

ensembl_id ENSDARG00000040571

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018109 False 3332 mRNA 0.49 19 23423672 23442891
TCONS_00018110 False 1284 mRNA 0.47 8 23437421 23443588
TCONS_00018111 True 1504 mRNA 0.46 9 23437421 23443937

Neighbor

gene id symbol gene type direction distance location
XLOC_009209 kmt2a coding downstream 3502 23382199 ~ 23420170 (-)
XLOC_009208 c1qtnf5 coding downstream 47131 23369020 ~ 23376541 (-)
XLOC_009207 mcamb coding downstream 80920 23271862 ~ 23342752 (-)
XLOC_009206 ccdc153 coding downstream 217089 23200217 ~ 23206583 (-)
XLOC_009205 NA coding downstream 269412 23144954 ~ 23154260 (-)
XLOC_009211 pdzd3a coding upstream 8925 23452862 ~ 23467750 (-)
XLOC_009212 nlrx1 coding upstream 24088 23468025 ~ 23485752 (-)
XLOC_009213 abcg4b coding upstream 43793 23487730 ~ 23508214 (-)
XLOC_009214 hmbsb coding upstream 67470 23511407 ~ 23529945 (-)
XLOC_009215 si:dkey-182i3.11 coding upstream 100494 23544431 ~ 23546452 (-)
XLOC_009204 BX572079.1 non-coding downstream 468540 22955017 ~ 22955132 (-)
XLOC_009203 CR388121.1 non-coding downstream 702791 22720765 ~ 22720881 (-)
XLOC_009202 NA non-coding downstream 828787 22588504 ~ 22594885 (-)
XLOC_009200 CR936967.1 non-coding downstream 1162675 22260881 ~ 22260997 (-)
XLOC_009227 CU313324.1 non-coding upstream 715016 24158953 ~ 24159067 (-)
XLOC_009228 NA non-coding upstream 1117884 24561821 ~ 24563061 (-)
XLOC_009230 NA non-coding upstream 1148388 24592325 ~ 24618905 (-)
XLOC_009234 NA non-coding upstream 1457614 24901551 ~ 24927093 (-)
XLOC_009236 NA non-coding upstream 1524155 24968092 ~ 24974112 (-)

Expression


Co-expression Network