XLOC_009207 (mcamb)


Basic Information

Item Value
gene id XLOC_009207
gene name mcamb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 23271862 ~ 23342752 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018105
CAGGCGCGCTCACTGTAAACCTGTGCTGTCCAGCGCGGTtctccactctctctctctcggtcagtcagtcagtcagtaattGTTTCTTTCCAAACAGCAGAACCAAAATCTGGAGAAATGACCTACACCGCACTGCTGCTCGCGGGACTCGCCGTTCTCACCTGCAAAACATGGGCTTTGGTGGATGTGAGAATGGAAGACGTGGTGGAGGTAACTTTGAAAGGCCAGGCAAAGATCAGCTGTACTTACACTCTGACGGAAGAAGCCAAGATGATAATCTGGTTTACGAAATTACCAGGCAAGGACCAAAACAGGAAAAGATTTTACTACTCTGAAAATCAAACCGAGATTATCGATCAGAACCATGAATATGCAGAGCGGATCAAAGTCAGTCACTCTTATGACACAGAGGAAGAGCGTGGTAGTGTTGTTCTGATCCTCGACGATGTGCAACTGACTGATGAGAGAGAGTTCATCTGCATGGTGCACAGTGTGTTGAATGATGTTGGTGAAGGACGCACTCATCTCAAAATCTACAATTCACCATCTCTACCTGTGATTGAACGTGAACACACAGGGATTTCTGTTAGTGAGACAGAACCGTCAAAGGTTGCACAATGTAAAGTGGATGATGGCTATCCCAGACCCAACATTACATGGTACAAGGGCAGCTTCCCTCTCGATCCTTCAGATGGTGAGGTCAAGATCTTGGAGTCAGTGACGGTCAAACCAAGTGGCCTGTTCAGGGTAGAGAGTGAACTGCATATCAAAGTCAAGAAGGAAGATGAAGGTGCTCATTTCTACTGTGAAGTCAAGTACTTAATGCTTGGTAAAGCAAGAATGACAGAGTCCAGTCGATTCAACGTCACAGTTCATTACCCTACAACAAATATAAAGCTCTCCATAAATCCACCTGATAAGCTTATAAAAGAAGGTGACACTCTGGAGTTACAATGTGAGGGAAATGGAAACCCTCAACCCATTTTTAGTTTCAGACATGGCGAGAGGGATTTAATAAACGAAGACAATGGAATACTACATCTGAAAAACGTTAAGCGCTCAGACAGCGGGGAATATGTGTGCGAGTCGTTAGACTTAGACACAGGCATGAATTATGAGGACTCCCTCAATATCAAAGTACATTatcTGGATAATATTATGGTGACACCAGACGAGACAGATCCAGACCAGGGGCATGATATCACCTTGACTTGCAACGCATTGTCTTCTTTACCCACACACACAGCATGGTATAAGGATGGCAAGCTGCTGGTCGAGAGGCATGTTTTGGAGTTACACAACGCCTCCTATGAAACCACGGGGAAGTATATGTGTGAAGTGATGGTCCTTTCCCTGCcagagttaaaaaaacaaaagtcagTGCAAGTAAACGTGCGAGGAAAGCCTGAGATTAAAGAAGGAATAAAAGTGAACCAGATGAATAAGGTGAACCACCCTGTAAACCTGACCTGCTATGCACAAGGCTACCCAATCCCCAACATCACCTGGACCCTCTTTGACCAACAGACTGGCCAGATCGTCCCTGTACTAAAAATAGTGAACCAAATGATGGACAATAGTGTTCACAGCTTGATTTCTGTGAAAGCCACCTCTGATCTCATTGCCAACTGCAGCGCCACCAATGAGCTGGGCACAGATGATGCTTCTCAAAGCATTAAAGCATTTGTACGTGTGACAACGATTTCACCCACATCCACTACCACTGAAGGTGGCAGTGGAGTGATCATTGCGGTCATCATCATCTGTCTGCTCCTCATAGCCATAGTGGGAAGCGTGCTCTATTACCTCTACAAGAAGGGAAAGCTGCCCTGTGGACGATCAGGAAAGAAGGACTTCATGAAGCAAAAGGCCAGTAAGGATGATATTGTGATGGAGATGAAGAGCGGTAAATCTGAAGAGGCTGTTCTTCTACAGGGAGTCAACGGAGACAAAAAGTCACCCACTGAATAGGTCAATACTTCTGAACACGTTCACATTATTGGCTCTTCTACAGTCCTCTGAACTCAAATCCAATCCGAAGACCCACGATTTATAAGGCAGACACTCCCTGTGCCATGAAAACCTCGCATTTTCTTTCAAACAATGTCAAAGACTAAAAACTACATGGACATGTTGTCCTCGAGTGCTCCGTCTCAGGGTGAATCCCAATATGAGTGCAGAAAGACCTCAATTTCCCCTCTTCTTGGATTCCCACTCAGTTCCACTCTTGTCTTCCCATGTTTTCTATTAGACTCGCTATAATCTGACTCCATATACAGTTCTGAAAGGTTAATAAAAGGCGCAGATCACCCAAAACTGGAtatttacttaccatttactcaccctcaaggtttatttcttctgttgaacacagttgaagttttgaagaatgttggaaaccagtagacattcatagtaggaaaaaaaaataccatggaagtgATGGCTAGTGAGTTCcaatattattcataatattgtctttatagtatttttaatgttctgaactgaaaaaaaataaacgtggagtgtaaatgatgacaaaatatttattttggggtgaaaaaTCAATGAAAGAATGACTCCGCTCAAGTATTCAAAcgtgtagatatatatatatatatatatatattatataaaatattgtatatatttagctatttaatATGCCTGAGACATCATTTGAAAGGTTGTGCTTGAATATCTTTATGATAACGCAAGTGCCTTTGTTGAGGGGCATTCAACAAGTGCCGAAGAGTCATAATTTGCTTCATGCTGTCATTGTGTCTGTTCTGAACCTGCTTTCACATCATAGTCCATGCACTGAAGCACCAAGACTGTCTTTACCACTGTAAACCTTCATCAGGATCAGCGCTGAAACTGCCCAGTGATAAAGCTTGAGGGCAATTTCTGTACAAATAAATTAGTCAGGGAAATTCTCTGACACGGCTGACCTTTTTTTCCAAATATGTAAGCAAAATGTTGGGTTCATGTCATGCCTctgagtttttattttgattagctATTTCATATGAGATTTCTCATGTTCACTGTGACAGGAGAGGGAGTTACGTTAATGCCAAAGTCTGAGTTAAAAATGTCCCGGCCTGAGAGAAGCGCAAGCATCCTGTAGAGCTCAGCTTTATTACGTTTTTTTTACTTTCGTGATCTGCTGTCCTCAACTTGCACtgaatgtaaataataaacaattacacGACCAACCTTttttcattttagaggaaatAGTCAAATGCACGTTGAATTATTCAACACATCGAGCAGACGgtagaataaaataattatttttttatacttttttttttttttgccaaaactctgtttatattatattatatttttcccaGTTCATATTTTGAAGATGTTAAAGTTGCATTGAGGAAGGTGTCTTAGTCTTGGCAGTATGTACCATGTACTGTAACCAAAGCAGAGCCACAAGCTCTAAACAACAACTCTTTTCACACTGAACCTCTTGTTGCATTTCCTTTGCATTTCTGTTTGGTGTCAGTGGAATTTTTGTTAATGCTTGTTTTTGAATTGTCTTTGAATTTCTATTAAAATTGTGAGTTTACTCAGCCTTAA

Function

symbol description
mcamb Acts upstream of or within several processes, including epithelial cilium movement involved in determination of left/right asymmetry; plasma membrane bounded cell projection organization; and vasculature development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; blood island; cardiovascular system; forerunner cell group; and neurons. Orthologous to human MCAM (melanoma cell adhesion molecule).

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0031103 axon regeneration biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0060026 convergent extension biological_process
GO:0001944 vasculature development biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030219-213 Acts upstream of or within several processes, including epithelial cilium movement involved in determination of left/right asymmetry; plasma membrane bounded cell projection organization; and vasculature development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; blood island; cardiovascular system; forerunner cell group; and neurons. Orthologous to human MCAM (melanoma cell adhesion molecule).

Ensembl:

ensembl_id ENSDARG00000005368

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018105 True 3597 mRNA 0.41 15 23271862 23342752

Neighbor

gene id symbol gene type direction distance location
XLOC_009206 ccdc153 coding downstream 65279 23200217 ~ 23206583 (-)
XLOC_009205 NA coding downstream 117602 23144954 ~ 23154260 (-)
XLOC_009204 BX572079.1 coding downstream 316730 22955017 ~ 22955132 (-)
XLOC_009203 CR388121.1 coding downstream 550981 22720765 ~ 22720881 (-)
XLOC_009202 NA coding downstream 676977 22588504 ~ 22594885 (-)
XLOC_009208 c1qtnf5 coding upstream 26268 23369020 ~ 23376541 (-)
XLOC_009209 kmt2a coding upstream 39447 23382199 ~ 23420170 (-)
XLOC_009210 ube4a coding upstream 80920 23423672 ~ 23443937 (-)
XLOC_009211 pdzd3a coding upstream 110110 23452862 ~ 23467750 (-)
XLOC_009212 nlrx1 coding upstream 125273 23468025 ~ 23485752 (-)
XLOC_009200 CR936967.1 non-coding downstream 1010865 22260881 ~ 22260997 (-)
XLOC_009227 CU313324.1 non-coding upstream 816201 24158953 ~ 24159067 (-)
XLOC_009228 NA non-coding upstream 1219069 24561821 ~ 24563061 (-)
XLOC_009230 NA non-coding upstream 1249573 24592325 ~ 24618905 (-)
XLOC_009234 NA non-coding upstream 1558799 24901551 ~ 24927093 (-)
XLOC_009236 NA non-coding upstream 1625340 24968092 ~ 24974112 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_03433597_03448384 MCAM coding CI01000072 null 3433597 ~ 3449381 (+)