CI01000046_01421301_01451701 (HS3ST2)


Basic Information

Item Value
gene id CI01000046_01421301_01451701
gene name HS3ST2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1420512 ~ 1451931 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_01421301_01451701.mRNA
AGTGGAATTACATATGTTGTTTGCTAATTTGGGAACTTTGTCATCTTATTGATACCTGTTCTTCTCAGACTTTCTGTCATCTTATGTGTCCGGTCGGAAATATTAACTATCATTTTCCCAAATGAGATGTAAGTTCGCGCCTTCGGAGTTGATGGGGAGCACGAGACAACCAGCAAACCTCACTGAGAAACTTACGGAGAAAAACATGCCGTCTTTTCATCCATGGAGACATGGCATATAGGTTCCTCTCCAGCCGAATCGTGCCATCCTCAAACAGATTAAGCAGAAGAATTATTTTTATATTCACTATCTCTTTGTGTTTCATGTATCTATGCTACAGCATCCTCTTCTGCTCCGGTACAATCATGCCTAACCAGAGATTGGAGGATCACCGCTGCGTCCATCTGAAGAACATGGGAAGTAAAAAACTTTTACAGAAGTCACATTATTGCACTATATCAGCGAAAGCGAGAGTTATCTCGGATGAGACGAGGGCTGTGGGTCTCTTAAACCAAAGCAAACATTCAGCCTTTCAGAAAACACAAGATGTGGTAGATCACAAGCAGAGTAATAACAGTAATTCGCCAAAATACGGAAATAAGAAGTTGCCCAATGCACTTATAGTTGGCGTTAAGAAAGGAGGCACCAGGGCAGTGCTGGAGTTCATCCGGATTCATCCAGATGTTCGAGCTCTTGGGACTGAACCACATTTCTTTGATAGAAACTATGACAAAGGATTGGACTGGTACAGGACTATGGAGGTAAAGTATAGAAACTCCTGCTTTAGGATAGCCCATTATGAATCGGGGATGAGTCTGAAGCTGGTGGAAACTCGAGGTTATTCTCTGACCCCTGTGTTCCATACAATAAGACGGGGCCTTATGCCACGGACTCTGGACAGCCAAATCACCATGGAGAAAACACCGAGTTACTTTGTGACACGGGAGGCACCGCGACGCATCTCAAACATGTCTCGTGAAACAAAGCTGATTGTTGTAGTGCGAAACCCGGTCACGAGGGCGATCTCCGACTACACACAGACCCTGTCAAAGAAGCCCGACATCCCCTCTTTTGAAGAACTAGCATTCAAGAACAGGAGTCAAGGCATCGTGGACACCTCCTGGAATGCCATCCGCATAGGCATGTATATCCTACACCTGGAGAACTGGCTGCAATACTTTCGTCTGTCACAGATTCATTTTGTCAGTGGGGAGCGGCTCATCACGGATCCGGCCGGAGAGCTGGGCCGGGTGCAGGACTTCCTGGGGCTCAAACGCATAATCACAGACAAGCACTTCTACTTCAACCGAACAAAAGGCTTCCCGTGCCTGAAGAAGCCGGAAAGCAGCAGCCAGCCCCGCTGCCTGGGCAAGTCCAAGGGCAGAACTCACGTTCAGATTGACCAGGAAGTCATCGAGCAGCTTAGAGAATTTTATAGGCCATTTAATGTGAAATTTTATGAAATGGTGGGTCATGACTTCAGATGGGACTGAGGAGGAGGACCTTGGTGAAACCAACCTCCCTCTTCTGGTATGTCTTCAAGGGATTGTTCACCCAAAAATTAAAATTTGGTCATTATTTACTCACCATAACATTGTTCCAAACCTGTAAGACTTTCTTTCTTCTGTGGAGCATAAACGAAGATATTTAGAAGAATGTGCTGGTTGCTGTTTACTCATTTTCCATAAAGTCATATGGACAACTTTTATAATACTTTTATGGTGTTTTTGCACCCTTTTTAAAGCTTGAAAGCTCCAGTTTATTATATATACACTACTGTTCAAAAGTTTTGGGTCAGTAAGTTTTTTTTTTGTTTTTTTTTTTTAAAGAAATATGTTTCTTTAGCAGCAACTCAGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGACATCACAGGAATAATTAGATTAAATATCTTAAAATAGACAGTTCTTTTAAATCGTAATAATACAATATTACTGTTTTTACGGTATTACTGTGTGATCAAATAAATGCAGCCTTGGTGGGCATAAGAGACTTCTTTCAAAAACATAAAAAAAAAAAAAAAAAAATCTTACTGACCACAAACTTTTGAACGCTGATACAGTTTAAATCAGTTTGGAGGGTGAGTAAATGATGACTAAACTTTGTGAGGACAAAATTGTAATTTTTGGAAGAACTATCCATTTGAACCGGTTTGCAGGACGAAATGAAACAGAACACCTCAAACTAATTAAGACCCAGTGCTCTTAATATATTAAA

Function

symbol description
hs3st2 Predicted to enable [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and otic vesicle. Human ortholog(s) of this gene implicated in colon cancer; lung cancer; and pancreatic cancer. Orthologous to human HS3ST2 (heparan sulfate-glucosamine 3-sulfotransferase 2).

NR:

description
Heparan sulfate (glucosamine) 3-O-sulfotransferase 2

GO:

id name namespace
GO:0016232 HNK-1 sulfotransferase activity molecular_function

KEGG:

id description
K07808 HS3ST2; [heparan sulfate]-glucosamine 3-sulfotransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_01421301_01451701.mRNA True 2282 mRNA 0.41 3 1420512 1451931

Neighbor

gene id symbol gene type direction distance location
CI01000046_01236373_01241067 UBE2I coding downstream 179445 1235992 ~ 1241067 (-)
CI01000046_01167146_01194022 BAIAP3 coding downstream 226490 1167028 ~ 1194022 (-)
CI01000046_01098117_01099160 GPR146 coding downstream 321352 1097258 ~ 1099160 (-)
CI01000046_01074910_01076076 GPER1 coding downstream 344088 1074798 ~ 1076424 (-)
CI01000046_01047300_01066367 UNKL, UNKL.S coding downstream 354145 1047209 ~ 1066367 (-)
CI01000046_01814833_01858924 NA coding upstream 362873 1814804 ~ 1859010 (-)
CI01000046_01926303_01931836 NSMCE1 coding upstream 474193 1926124 ~ 1932117 (-)
CI01000046_01970499_01979300 NA coding upstream 518060 1969991 ~ 1979300 (-)
CI01000046_02031809_02034289 NA coding upstream 579528 2031459 ~ 2034289 (-)
CI01000046_02171626_02174287 NA coding upstream 719523 2171454 ~ 2174302 (-)
G195563 NA non-coding downstream 23948 1396212 ~ 1396564 (-)
G195455 NA non-coding downstream 111951 1308264 ~ 1308561 (-)
G195408 NA non-coding downstream 117351 1289822 ~ 1303161 (-)
G195445 NA non-coding downstream 137184 1277508 ~ 1283328 (-)
G195435 NA non-coding downstream 168348 1250963 ~ 1252164 (-)
G195798 NA non-coding upstream 83281 1535212 ~ 1535422 (-)
G195852 NA non-coding upstream 192230 1644161 ~ 1719791 (-)
G195856 NA non-coding upstream 202029 1653960 ~ 1673720 (-)
G196405 NA non-coding upstream 460247 1912178 ~ 1912448 (-)
G196424 NA non-coding upstream 510350 1962281 ~ 1962515 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 640219 774434 ~ 780293 (-)
G195098 NA other downstream 744384 670736 ~ 676128 (-)
G195097 NA other downstream 994186 407423 ~ 426326 (-)
CI01000046_00063416_00065082 NA other downstream 1354601 63153 ~ 65082 (-)
G196463 NA other upstream 716335 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 1414328 2866070 ~ 2867794 (-)
G198265 NA other upstream 2305692 3665243 ~ 3800101 (-)
G199054 NA other upstream 4645428 6097359 ~ 6097674 (-)
G199014 NA other upstream 4912247 6364178 ~ 6375406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025663 hs3st2 coding NC_007114.7 CM002887.2 44947355 ~ 45000645 (+)
tiger barb (Puntius tetrazona) G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding NC_056701.1 CM032070.1 8881198 ~ 8882122 (+)