CI01000046_01926303_01931836 (NSMCE1)


Basic Information

Item Value
gene id CI01000046_01926303_01931836
gene name NSMCE1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 1926124 ~ 1932117 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_01926303_01931836.mRNA
AGCTATTATAACAGAATAATGAGACCTAAAGATAAAGTAGCCTACTATCTGAACCATCTAGATCTTAAATGACTGCCTGTGTCCTATTCCCGTGGAAAATCATCATATTTTGACTATTGTTTAGTTCAACTTGTTATAAAATGTCTTGTTAATACATAAGGGTTCTCCAACAGTCGATCATATTACCATTAATCATGTTTGCCTGGTCGGTATTTGCAGGTTTTTGGGAGATTTTGTTTATCAAAAAATGTGTTTTTTAGCTCAAGAGGACTTTAAGCAGAATGTCTCGACAAATGGCAGACAGTCACAGGCGCTTCTTGCAGACCATGATGAGCAATGGCATCATCAGTTCATCTCAGGCTGAAGCGCTACACAAACACTGCTGTGAGACCCATGGAGCACATCATGTGGCAGACCGATTAGATGATTTCATTAATGTCATCAACGCTCACCTTCAGCCATTGTTCATGTACATCAGGAAAGGCATGTCTGAAGAGAATGGGCTCGAGTATTATGCCTTGGTAAACATGACAGAGACGGACATAACAAGAATGGCATCTGATTATGCAGATAATGAACTGGAATTATTCAGGAAAACGATGGATCTGATTGTGGACTCTGAGAGCGGTTCTGCTTCCTCCACTGATATTTTAAATTGTGCCGACAGCCTCCGGACAAAGAAACTGAAGAAAAAAGAAACCGAACAAGTCTTAAACAAATTTGTCCAGGACAAATGGTTAAATGAGAAAGATGGTGAATACACTCTTAGTGTCCGCTGTGTTCTGGAGATGGAACAGTATATGCGCACAATCTACCAGGATCTCATCAAAGTGTGTTATGTGTGCCACAACATTGCCCTGCAGAGCCAAATGTGTGAAAACCCAACATGTGGAATCAAGATGCACCTCCCGTGTGTTGCTAAATATTTTAGAGCACGCAGTGACCCTCATTGTCCATCATGCAGTGATTTCTGGCCACATGAGATTCCAGAAATGCAGCGTTTCCAGTCACAGAGTTCACAAAATCTGCCTTCATCATCTAAAGAGAACACTGCTCCCGCACCGTCACGCCGGTCGAGAAGGTCGTAATCTCAAAGCCTGCTGGTCCATCGCTGCAGCTATTATGGGGATATTTCAAGTGCTTTCTCTTAAGATTCTAAGATCGTTTTTACATGTGTTTTCTATTATTAAAGTATTGTTATTGAATAAGTTTCTCAATTCCACTTTTTTTTGTTAGAATTTTGATTCAAGATAATTGTGCAAATAAA

Function

symbol description
nsmce1 Predicted to enable protein dimerization activity and ubiquitin protein ligase activity. Predicted to be involved in double-strand break repair via homologous recombination; positive regulation of response to DNA damage stimulus; and postreplication repair. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in chromosome, telomeric region. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus. Orthologous to human NSMCE1 (NSE1 homolog, SMC5-SMC6 complex component).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_01926303_01931836.mRNA True 1267 mRNA 0.40 7 1926124 1932117

Neighbor

gene id symbol gene type direction distance location
CI01000046_01814833_01858924 NA coding downstream 67114 1814804 ~ 1859010 (-)
CI01000046_01421301_01451701 HS3ST2 coding downstream 474193 1420512 ~ 1451931 (-)
CI01000046_01236373_01241067 UBE2I coding downstream 685057 1235992 ~ 1241067 (-)
CI01000046_01167146_01194022 BAIAP3 coding downstream 732102 1167028 ~ 1194022 (-)
CI01000046_01098117_01099160 GPR146 coding downstream 826964 1097258 ~ 1099160 (-)
CI01000046_01970499_01979300 NA coding upstream 37874 1969991 ~ 1979300 (-)
CI01000046_02031809_02034289 NA coding upstream 99342 2031459 ~ 2034289 (-)
CI01000046_02171626_02174287 NA coding upstream 239337 2171454 ~ 2174302 (-)
CI01000046_02206354_02213335 GALR2B, GALR2, MCHR2 coding upstream 274230 2206347 ~ 2213335 (-)
CI01000046_02248205_02252489 ZFAND2A coding upstream 315846 2247963 ~ 2252489 (-)
G196405 NA non-coding downstream 13676 1912178 ~ 1912448 (-)
G195852 NA non-coding downstream 206333 1644161 ~ 1719791 (-)
G195856 NA non-coding downstream 252404 1653960 ~ 1673720 (-)
G195798 NA non-coding downstream 390702 1535212 ~ 1535422 (-)
G195563 NA non-coding downstream 529560 1396212 ~ 1396564 (-)
G196424 NA non-coding upstream 30164 1962281 ~ 1962515 (-)
G196390 NA non-coding upstream 31610 1963727 ~ 1966431 (-)
G196373 NA non-coding upstream 34951 1967068 ~ 1968357 (-)
G196384 NA non-coding upstream 36320 1968437 ~ 1968699 (-)
G196370 NA non-coding upstream 55944 1988061 ~ 1989222 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 1145831 774434 ~ 780293 (-)
G195098 NA other downstream 1249996 670736 ~ 676128 (-)
G195097 NA other downstream 1499798 407423 ~ 426326 (-)
CI01000046_00063416_00065082 NA other downstream 1860213 63153 ~ 65082 (-)
G196463 NA other upstream 236149 2168266 ~ 2168644 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 other upstream 934142 2866070 ~ 2867794 (-)
G198265 NA other upstream 1825506 3665243 ~ 3800101 (-)
G199054 NA other upstream 4165242 6097359 ~ 6097674 (-)
G199014 NA other upstream 4432061 6364178 ~ 6375406 (-)

Expression


Co-expression Network