Gene
RNA
| Item | Value |
|---|---|
| gene id | G196373 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000046 |
| NCBI id | null |
| chromosome length | 7063170 |
| location | 1967068 ~ 1968357 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU223021 | True | 1290 | lncRNA | 0.30 | 1 | 1967068 | 1968357 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000046_01926303_01931836 | NSMCE1 | coding | downstream | 34951 | 1926124 ~ 1932117 (-) |
| CI01000046_01814833_01858924 | NA | coding | downstream | 108058 | 1814804 ~ 1859010 (-) |
| CI01000046_01421301_01451701 | HS3ST2 | coding | downstream | 515137 | 1420512 ~ 1451931 (-) |
| CI01000046_01236373_01241067 | UBE2I | coding | downstream | 726001 | 1235992 ~ 1241067 (-) |
| CI01000046_01167146_01194022 | BAIAP3 | coding | downstream | 773046 | 1167028 ~ 1194022 (-) |
| CI01000046_01970499_01979300 | NA | coding | upstream | 1634 | 1969991 ~ 1979300 (-) |
| CI01000046_02031809_02034289 | NA | coding | upstream | 63102 | 2031459 ~ 2034289 (-) |
| CI01000046_02171626_02174287 | NA | coding | upstream | 203097 | 2171454 ~ 2174302 (-) |
| CI01000046_02206354_02213335 | GALR2B, GALR2, MCHR2 | coding | upstream | 237990 | 2206347 ~ 2213335 (-) |
| CI01000046_02248205_02252489 | ZFAND2A | coding | upstream | 279606 | 2247963 ~ 2252489 (-) |
| G196390 | NA | non-coding | downstream | 637 | 1963727 ~ 1966431 (-) |
| G196424 | NA | non-coding | downstream | 4553 | 1962281 ~ 1962515 (-) |
| G196405 | NA | non-coding | downstream | 54620 | 1912178 ~ 1912448 (-) |
| G195852 | NA | non-coding | downstream | 247277 | 1644161 ~ 1719791 (-) |
| G195856 | NA | non-coding | downstream | 293348 | 1653960 ~ 1673720 (-) |
| G196384 | NA | non-coding | upstream | 80 | 1968437 ~ 1968699 (-) |
| G196370 | NA | non-coding | upstream | 19704 | 1988061 ~ 1989222 (-) |
| G196427 | NA | non-coding | upstream | 37431 | 2005788 ~ 2007561 (-) |
| G196439 | NA | non-coding | upstream | 142839 | 2111196 ~ 2111536 (-) |
| G196441 | NA | non-coding | upstream | 150246 | 2118603 ~ 2118818 (-) |
| CI01000046_00777923_00780186 | RPC11, POLR3K, POLR3K.S | other | downstream | 1186775 | 774434 ~ 780293 (-) |
| G195098 | NA | other | downstream | 1290940 | 670736 ~ 676128 (-) |
| G195097 | NA | other | downstream | 1540742 | 407423 ~ 426326 (-) |
| CI01000046_00063416_00065082 | NA | other | downstream | 1901157 | 63153 ~ 65082 (-) |
| G196463 | NA | other | upstream | 199909 | 2168266 ~ 2168644 (-) |
| CI01000046_02866255_02867695 | MRM2, FTSJ2 | other | upstream | 897902 | 2866070 ~ 2867794 (-) |
| G198265 | NA | other | upstream | 1789266 | 3665243 ~ 3800101 (-) |
| G199054 | NA | other | upstream | 4129002 | 6097359 ~ 6097674 (-) |
| G199014 | NA | other | upstream | 4395821 | 6364178 ~ 6375406 (-) |
